Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS20645

Experiment: LB no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS20635 and AZOBR_RS20640 are separated by 265 nucleotidesAZOBR_RS20640 and AZOBR_RS20645 overlap by 1 nucleotidesAZOBR_RS20645 and AZOBR_RS20650 are separated by 21 nucleotides AZOBR_RS20635: AZOBR_RS20635 - putative methyl-accepting chemotaxis protein, at 1,389,331 to 1,391,007 _RS20635 AZOBR_RS20640: AZOBR_RS20640 - glutamyl-tRNA amidotransferase subunit C, at 1,391,273 to 1,391,560 _RS20640 AZOBR_RS20645: AZOBR_RS20645 - glutamyl-tRNA(Gln) amidotransferase, at 1,391,560 to 1,393,041 _RS20645 AZOBR_RS20650: AZOBR_RS20650 - glutamyl-tRNA amidotransferase subunit B, at 1,393,063 to 1,394,514 _RS20650 Position (kb) 1391 1392 1393 1394Strain fitness (log2 ratio) -1 0 1 2at 1390.731 kb on - strand, within AZOBR_RS20635at 1390.784 kb on + strand, within AZOBR_RS20635at 1390.817 kb on + strand, within AZOBR_RS20635at 1390.818 kb on - strand, within AZOBR_RS20635at 1390.818 kb on - strand, within AZOBR_RS20635at 1390.818 kb on - strand, within AZOBR_RS20635at 1390.832 kb on + strand, within AZOBR_RS20635at 1390.833 kb on - strand, within AZOBR_RS20635at 1391.063 kb on - strandat 1391.077 kb on - strandat 1391.155 kb on + strandat 1391.156 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress control
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1,390,731 - AZOBR_RS20635 0.83 -0.4
1,390,784 + AZOBR_RS20635 0.87 -0.4
1,390,817 + AZOBR_RS20635 0.89 -0.1
1,390,818 - AZOBR_RS20635 0.89 -0.8
1,390,818 - AZOBR_RS20635 0.89 +0.3
1,390,818 - AZOBR_RS20635 0.89 +0.3
1,390,832 + AZOBR_RS20635 0.90 -0.1
1,390,833 - AZOBR_RS20635 0.90 -0.1
1,391,063 - +0.1
1,391,077 - +1.8
1,391,155 + +0.3
1,391,156 - -0.5

Or see this region's nucleotide sequence