Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS15770

Experiment: LB no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS15765 and AZOBR_RS15770 are separated by 17 nucleotidesAZOBR_RS15770 and AZOBR_RS15775 are separated by 170 nucleotides AZOBR_RS15765: AZOBR_RS15765 - osmoprotectant uptake system permease, at 287,481 to 288,653 _RS15765 AZOBR_RS15770: AZOBR_RS15770 - osmoprotectant uptake system substrate-binding protein, at 288,671 to 289,591 _RS15770 AZOBR_RS15775: AZOBR_RS15775 - ferrochelatase, at 289,762 to 290,811 _RS15775 Position (kb) 288 289 290Strain fitness (log2 ratio) -1 0 1at 287.855 kb on - strand, within AZOBR_RS15765at 288.142 kb on + strand, within AZOBR_RS15765at 288.418 kb on + strand, within AZOBR_RS15765at 288.418 kb on + strand, within AZOBR_RS15765at 288.861 kb on + strand, within AZOBR_RS15770at 288.861 kb on + strand, within AZOBR_RS15770at 288.862 kb on - strand, within AZOBR_RS15770at 289.045 kb on - strand, within AZOBR_RS15770at 289.275 kb on + strand, within AZOBR_RS15770at 289.344 kb on + strand, within AZOBR_RS15770

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress control
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287,855 - AZOBR_RS15765 0.32 -0.4
288,142 + AZOBR_RS15765 0.56 -0.6
288,418 + AZOBR_RS15765 0.80 -1.4
288,418 + AZOBR_RS15765 0.80 -0.0
288,861 + AZOBR_RS15770 0.21 -0.5
288,861 + AZOBR_RS15770 0.21 -0.6
288,862 - AZOBR_RS15770 0.21 -0.9
289,045 - AZOBR_RS15770 0.41 -0.3
289,275 + AZOBR_RS15770 0.66 +0.0
289,344 + AZOBR_RS15770 0.73 -1.3

Or see this region's nucleotide sequence