Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS03295

Experiment: LB no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS03285 and AZOBR_RS03290 are separated by 168 nucleotidesAZOBR_RS03290 and AZOBR_RS03295 are separated by 19 nucleotidesAZOBR_RS03295 and AZOBR_RS03300 are separated by 4 nucleotidesAZOBR_RS03300 and AZOBR_RS03305 are separated by 157 nucleotides AZOBR_RS03285: AZOBR_RS03285 - acetylglutamate kinase, at 695,219 to 696,118 _RS03285 AZOBR_RS03290: AZOBR_RS03290 - hypothetical protein, at 696,287 to 696,532 _RS03290 AZOBR_RS03295: AZOBR_RS03295 - cation:proton antiporter, at 696,552 to 697,820 _RS03295 AZOBR_RS03300: AZOBR_RS03300 - GTP-binding protein YsxC, at 697,825 to 698,487 _RS03300 AZOBR_RS03305: AZOBR_RS03305 - insertase, at 698,645 to 700,384 _RS03305 Position (kb) 696 697 698Strain fitness (log2 ratio) -2 -1 0 1at 696.380 kb on + strand, within AZOBR_RS03290at 696.381 kb on - strand, within AZOBR_RS03290at 696.381 kb on - strand, within AZOBR_RS03290at 696.381 kb on - strand, within AZOBR_RS03290at 696.381 kb on - strand, within AZOBR_RS03290at 697.012 kb on + strand, within AZOBR_RS03295at 697.013 kb on - strand, within AZOBR_RS03295at 697.013 kb on - strand, within AZOBR_RS03295at 697.013 kb on - strand, within AZOBR_RS03295at 697.165 kb on + strand, within AZOBR_RS03295at 697.283 kb on - strand, within AZOBR_RS03295at 698.543 kb on - strandat 698.543 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress control
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696,380 + AZOBR_RS03290 0.38 -2.6
696,381 - AZOBR_RS03290 0.38 -0.0
696,381 - AZOBR_RS03290 0.38 -0.2
696,381 - AZOBR_RS03290 0.38 +0.2
696,381 - AZOBR_RS03290 0.38 +0.5
697,012 + AZOBR_RS03295 0.36 -0.3
697,013 - AZOBR_RS03295 0.36 -0.1
697,013 - AZOBR_RS03295 0.36 +1.1
697,013 - AZOBR_RS03295 0.36 +0.8
697,165 + AZOBR_RS03295 0.48 +0.0
697,283 - AZOBR_RS03295 0.58 +0.2
698,543 - +0.2
698,543 - +0.1

Or see this region's nucleotide sequence