Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30140

Experiment: LB no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS30135 and AZOBR_RS30140 are separated by 148 nucleotidesAZOBR_RS30140 and AZOBR_RS30145 are separated by 149 nucleotides AZOBR_RS30135: AZOBR_RS30135 - GntR family transcriptional regulator, at 100,243 to 101,001 _RS30135 AZOBR_RS30140: AZOBR_RS30140 - multidrug transporter, at 101,150 to 102,022 _RS30140 AZOBR_RS30145: AZOBR_RS30145 - formate transporter, at 102,172 to 103,041 _RS30145 Position (kb) 101 102 103Strain fitness (log2 ratio) -2 -1 0 1 2at 100.169 kb on - strandat 100.295 kb on + strandat 100.745 kb on + strand, within AZOBR_RS30135at 100.745 kb on + strand, within AZOBR_RS30135at 100.745 kb on + strand, within AZOBR_RS30135at 100.745 kb on + strand, within AZOBR_RS30135at 100.745 kb on + strand, within AZOBR_RS30135at 100.745 kb on + strand, within AZOBR_RS30135at 100.745 kb on + strand, within AZOBR_RS30135at 100.745 kb on + strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.914 kb on - strand, within AZOBR_RS30135at 100.914 kb on - strand, within AZOBR_RS30135at 100.914 kb on - strand, within AZOBR_RS30135at 101.074 kb on - strandat 101.284 kb on - strand, within AZOBR_RS30140at 101.340 kb on + strand, within AZOBR_RS30140at 101.460 kb on + strand, within AZOBR_RS30140at 101.461 kb on - strand, within AZOBR_RS30140at 101.527 kb on - strand, within AZOBR_RS30140at 101.638 kb on - strand, within AZOBR_RS30140at 101.739 kb on + strand, within AZOBR_RS30140at 101.739 kb on + strand, within AZOBR_RS30140at 101.950 kb on - strandat 102.148 kb on + strandat 102.216 kb on - strandat 102.380 kb on + strand, within AZOBR_RS30145at 102.381 kb on - strand, within AZOBR_RS30145at 102.381 kb on - strand, within AZOBR_RS30145at 102.381 kb on - strand, within AZOBR_RS30145at 102.381 kb on - strand, within AZOBR_RS30145at 102.572 kb on + strand, within AZOBR_RS30145at 102.572 kb on + strand, within AZOBR_RS30145at 102.572 kb on + strand, within AZOBR_RS30145at 102.572 kb on + strand, within AZOBR_RS30145at 102.573 kb on - strand, within AZOBR_RS30145at 102.611 kb on + strand, within AZOBR_RS30145at 102.941 kb on + strand, within AZOBR_RS30145

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress control
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100,169 - +0.2
100,295 + +0.1
100,745 + AZOBR_RS30135 0.66 -0.1
100,745 + AZOBR_RS30135 0.66 +0.5
100,745 + AZOBR_RS30135 0.66 -0.1
100,745 + AZOBR_RS30135 0.66 +0.5
100,745 + AZOBR_RS30135 0.66 +0.3
100,745 + AZOBR_RS30135 0.66 -0.5
100,745 + AZOBR_RS30135 0.66 +0.1
100,745 + AZOBR_RS30135 0.66 -0.8
100,746 - AZOBR_RS30135 0.66 +0.1
100,746 - AZOBR_RS30135 0.66 +0.2
100,746 - AZOBR_RS30135 0.66 +0.3
100,746 - AZOBR_RS30135 0.66 -0.3
100,746 - AZOBR_RS30135 0.66 -0.2
100,746 - AZOBR_RS30135 0.66 +0.6
100,746 - AZOBR_RS30135 0.66 -0.2
100,746 - AZOBR_RS30135 0.66 -0.3
100,746 - AZOBR_RS30135 0.66 -0.2
100,746 - AZOBR_RS30135 0.66 -0.5
100,746 - AZOBR_RS30135 0.66 -0.3
100,914 - AZOBR_RS30135 0.88 +0.7
100,914 - AZOBR_RS30135 0.88 +0.6
100,914 - AZOBR_RS30135 0.88 +1.0
101,074 - -2.0
101,284 - AZOBR_RS30140 0.15 -0.9
101,340 + AZOBR_RS30140 0.22 -0.0
101,460 + AZOBR_RS30140 0.36 +0.0
101,461 - AZOBR_RS30140 0.36 -1.3
101,527 - AZOBR_RS30140 0.43 -0.5
101,638 - AZOBR_RS30140 0.56 -0.6
101,739 + AZOBR_RS30140 0.67 +0.1
101,739 + AZOBR_RS30140 0.67 -0.1
101,950 - -0.4
102,148 + +1.9
102,216 - -0.4
102,380 + AZOBR_RS30145 0.24 -0.0
102,381 - AZOBR_RS30145 0.24 +0.0
102,381 - AZOBR_RS30145 0.24 +0.8
102,381 - AZOBR_RS30145 0.24 -0.0
102,381 - AZOBR_RS30145 0.24 -0.7
102,572 + AZOBR_RS30145 0.46 +0.1
102,572 + AZOBR_RS30145 0.46 -1.2
102,572 + AZOBR_RS30145 0.46 -0.4
102,572 + AZOBR_RS30145 0.46 -1.2
102,573 - AZOBR_RS30145 0.46 -0.4
102,611 + AZOBR_RS30145 0.50 -0.4
102,941 + AZOBR_RS30145 0.88 -0.8

Or see this region's nucleotide sequence