Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS13095

Experiment: LB no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS13095 and AZOBR_RS13100 are separated by 673 nucleotides AZOBR_RS13095: AZOBR_RS13095 - 4Fe-4S ferredoxin, at 2,764,808 to 2,765,119 _RS13095 AZOBR_RS13100: AZOBR_RS13100 - malonic semialdehyde reductase, at 2,765,793 to 2,766,362 _RS13100 Position (kb) 2764 2765 2766Strain fitness (log2 ratio) -1 0 1at 2763.820 kb on + strandat 2763.923 kb on - strandat 2763.923 kb on - strandat 2763.923 kb on - strandat 2764.141 kb on - strandat 2764.212 kb on + strandat 2764.212 kb on + strandat 2764.213 kb on - strandat 2764.495 kb on - strandat 2764.940 kb on + strand, within AZOBR_RS13095at 2764.941 kb on - strand, within AZOBR_RS13095at 2764.941 kb on - strand, within AZOBR_RS13095at 2764.941 kb on - strand, within AZOBR_RS13095at 2764.976 kb on + strand, within AZOBR_RS13095at 2764.976 kb on + strand, within AZOBR_RS13095at 2764.976 kb on + strand, within AZOBR_RS13095at 2764.976 kb on + strand, within AZOBR_RS13095at 2764.977 kb on - strand, within AZOBR_RS13095at 2765.052 kb on - strand, within AZOBR_RS13095at 2765.052 kb on - strand, within AZOBR_RS13095at 2765.884 kb on - strand, within AZOBR_RS13100at 2766.036 kb on + strand, within AZOBR_RS13100

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress control
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2,763,820 + +0.2
2,763,923 - -0.2
2,763,923 - -0.2
2,763,923 - -0.8
2,764,141 - -0.3
2,764,212 + -0.4
2,764,212 + -0.9
2,764,213 - -0.7
2,764,495 - -0.2
2,764,940 + AZOBR_RS13095 0.42 -0.2
2,764,941 - AZOBR_RS13095 0.43 -0.4
2,764,941 - AZOBR_RS13095 0.43 +0.1
2,764,941 - AZOBR_RS13095 0.43 +0.8
2,764,976 + AZOBR_RS13095 0.54 +0.7
2,764,976 + AZOBR_RS13095 0.54 +0.5
2,764,976 + AZOBR_RS13095 0.54 -0.2
2,764,976 + AZOBR_RS13095 0.54 +0.2
2,764,977 - AZOBR_RS13095 0.54 +0.3
2,765,052 - AZOBR_RS13095 0.78 +0.2
2,765,052 - AZOBR_RS13095 0.78 +0.9
2,765,884 - AZOBR_RS13100 0.16 +0.0
2,766,036 + AZOBR_RS13100 0.43 -1.0

Or see this region's nucleotide sequence