Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS12515

Experiment: LB no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS12510 and AZOBR_RS12515 are separated by 506 nucleotidesAZOBR_RS12515 and AZOBR_RS12520 are separated by 151 nucleotides AZOBR_RS12510: AZOBR_RS12510 - histidine kinase, at 2,636,757 to 2,638,172 _RS12510 AZOBR_RS12515: AZOBR_RS12515 - hypothetical protein, at 2,638,679 to 2,639,743 _RS12515 AZOBR_RS12520: AZOBR_RS12520 - hypothetical protein, at 2,639,895 to 2,640,377 _RS12520 Position (kb) 2638 2639 2640Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2638.287 kb on - strandat 2638.473 kb on + strandat 2638.608 kb on - strandat 2639.071 kb on + strand, within AZOBR_RS12515at 2639.071 kb on + strand, within AZOBR_RS12515at 2639.174 kb on + strand, within AZOBR_RS12515at 2639.175 kb on - strand, within AZOBR_RS12515at 2639.175 kb on - strand, within AZOBR_RS12515at 2639.175 kb on - strand, within AZOBR_RS12515at 2639.175 kb on - strand, within AZOBR_RS12515at 2639.175 kb on - strand, within AZOBR_RS12515at 2639.390 kb on + strand, within AZOBR_RS12515at 2639.390 kb on + strand, within AZOBR_RS12515at 2639.681 kb on + strandat 2639.681 kb on + strandat 2639.682 kb on - strandat 2639.682 kb on - strandat 2639.682 kb on - strandat 2639.682 kb on - strandat 2639.682 kb on - strandat 2639.903 kb on + strandat 2639.904 kb on - strandat 2640.455 kb on + strandat 2640.455 kb on + strandat 2640.456 kb on - strandat 2640.456 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress control
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2,638,287 - +0.1
2,638,473 + -0.1
2,638,608 - +0.3
2,639,071 + AZOBR_RS12515 0.37 -0.6
2,639,071 + AZOBR_RS12515 0.37 -1.0
2,639,174 + AZOBR_RS12515 0.46 -3.1
2,639,175 - AZOBR_RS12515 0.47 +0.1
2,639,175 - AZOBR_RS12515 0.47 -0.1
2,639,175 - AZOBR_RS12515 0.47 -0.3
2,639,175 - AZOBR_RS12515 0.47 -1.2
2,639,175 - AZOBR_RS12515 0.47 -0.7
2,639,390 + AZOBR_RS12515 0.67 -0.1
2,639,390 + AZOBR_RS12515 0.67 -0.0
2,639,681 + +2.9
2,639,681 + +1.9
2,639,682 - -0.2
2,639,682 - -0.1
2,639,682 - +0.7
2,639,682 - -0.6
2,639,682 - -0.0
2,639,903 + +0.4
2,639,904 - -0.3
2,640,455 + -0.6
2,640,455 + -0.5
2,640,456 - +0.9
2,640,456 - -0.2

Or see this region's nucleotide sequence