Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS13675

Experiment: LB no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS13665 and AZOBR_RS13670 are separated by 70 nucleotidesAZOBR_RS13670 and AZOBR_RS13675 are separated by 134 nucleotidesAZOBR_RS13675 and AZOBR_RS13680 are separated by 14 nucleotidesAZOBR_RS13680 and AZOBR_RS13685 are separated by 62 nucleotidesAZOBR_RS13685 and AZOBR_RS13690 are separated by 2 nucleotidesAZOBR_RS13690 and AZOBR_RS13695 are separated by 88 nucleotides AZOBR_RS13665: AZOBR_RS13665 - terminase, at 2,898,495 to 2,899,802 _RS13665 AZOBR_RS13670: AZOBR_RS13670 - hypothetical protein, at 2,899,873 to 2,900,097 _RS13670 AZOBR_RS13675: AZOBR_RS13675 - exported protein of unknown function, at 2,900,232 to 2,900,588 _RS13675 AZOBR_RS13680: AZOBR_RS13680 - hypothetical protein, at 2,900,603 to 2,900,806 _RS13680 AZOBR_RS13685: AZOBR_RS13685 - hypothetical protein, at 2,900,869 to 2,901,150 _RS13685 AZOBR_RS13690: AZOBR_RS13690 - addiction module antitoxin, at 2,901,153 to 2,901,458 _RS13690 AZOBR_RS13695: AZOBR_RS13695 - hypothetical protein, at 2,901,547 to 2,901,732 _RS13695 Position (kb) 2900 2901Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2899.466 kb on + strand, within AZOBR_RS13665at 2899.466 kb on + strand, within AZOBR_RS13665at 2899.467 kb on - strand, within AZOBR_RS13665at 2899.467 kb on - strand, within AZOBR_RS13665at 2899.490 kb on - strand, within AZOBR_RS13665at 2899.519 kb on + strand, within AZOBR_RS13665at 2899.520 kb on - strand, within AZOBR_RS13665at 2899.666 kb on + strand, within AZOBR_RS13665at 2899.666 kb on + strand, within AZOBR_RS13665at 2899.666 kb on + strand, within AZOBR_RS13665at 2899.666 kb on + strand, within AZOBR_RS13665at 2899.666 kb on + strand, within AZOBR_RS13665at 2899.666 kb on + strand, within AZOBR_RS13665at 2899.667 kb on - strand, within AZOBR_RS13665at 2899.727 kb on - strandat 2899.765 kb on - strandat 2899.765 kb on - strandat 2899.784 kb on + strandat 2899.784 kb on + strandat 2899.784 kb on + strandat 2899.785 kb on - strandat 2899.785 kb on - strandat 2899.785 kb on - strandat 2899.785 kb on - strandat 2899.834 kb on + strandat 2899.839 kb on + strandat 2899.839 kb on + strandat 2899.839 kb on + strandat 2899.840 kb on - strandat 2899.840 kb on - strandat 2899.840 kb on - strandat 2899.840 kb on - strandat 2899.895 kb on + strandat 2899.896 kb on - strand, within AZOBR_RS13670at 2899.896 kb on - strand, within AZOBR_RS13670at 2899.899 kb on - strand, within AZOBR_RS13670at 2899.899 kb on - strand, within AZOBR_RS13670at 2899.899 kb on - strand, within AZOBR_RS13670at 2900.048 kb on - strand, within AZOBR_RS13670at 2900.198 kb on + strandat 2900.198 kb on + strandat 2900.198 kb on + strandat 2900.198 kb on + strandat 2900.199 kb on - strandat 2900.332 kb on - strand, within AZOBR_RS13675at 2900.464 kb on - strand, within AZOBR_RS13675at 2900.464 kb on - strand, within AZOBR_RS13675at 2900.464 kb on - strand, within AZOBR_RS13675at 2900.464 kb on - strand, within AZOBR_RS13675at 2900.472 kb on + strand, within AZOBR_RS13675at 2900.473 kb on - strand, within AZOBR_RS13675at 2900.538 kb on + strand, within AZOBR_RS13675at 2900.538 kb on + strand, within AZOBR_RS13675at 2900.538 kb on + strand, within AZOBR_RS13675at 2900.539 kb on - strand, within AZOBR_RS13675at 2900.539 kb on - strand, within AZOBR_RS13675at 2900.539 kb on - strand, within AZOBR_RS13675at 2900.539 kb on - strand, within AZOBR_RS13675at 2900.605 kb on - strandat 2901.049 kb on + strand, within AZOBR_RS13685at 2901.050 kb on - strand, within AZOBR_RS13685at 2901.457 kb on - strandat 2901.457 kb on - strandat 2901.457 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress control
remove
2,899,466 + AZOBR_RS13665 0.74 +0.3
2,899,466 + AZOBR_RS13665 0.74 -0.2
2,899,467 - AZOBR_RS13665 0.74 -0.9
2,899,467 - AZOBR_RS13665 0.74 +0.2
2,899,490 - AZOBR_RS13665 0.76 -0.0
2,899,519 + AZOBR_RS13665 0.78 -0.2
2,899,520 - AZOBR_RS13665 0.78 -0.3
2,899,666 + AZOBR_RS13665 0.90 -0.1
2,899,666 + AZOBR_RS13665 0.90 +0.6
2,899,666 + AZOBR_RS13665 0.90 -0.0
2,899,666 + AZOBR_RS13665 0.90 +0.2
2,899,666 + AZOBR_RS13665 0.90 -0.2
2,899,666 + AZOBR_RS13665 0.90 -0.4
2,899,667 - AZOBR_RS13665 0.90 +3.0
2,899,727 - -0.4
2,899,765 - +0.5
2,899,765 - +0.6
2,899,784 + -0.1
2,899,784 + -0.5
2,899,784 + +0.7
2,899,785 - +0.4
2,899,785 - -0.2
2,899,785 - -0.1
2,899,785 - +0.1
2,899,834 + -0.8
2,899,839 + -0.2
2,899,839 + +0.3
2,899,839 + -0.1
2,899,840 - -1.0
2,899,840 - -0.7
2,899,840 - +0.4
2,899,840 - +0.5
2,899,895 + -0.4
2,899,896 - AZOBR_RS13670 0.10 -0.1
2,899,896 - AZOBR_RS13670 0.10 +0.1
2,899,899 - AZOBR_RS13670 0.12 -0.3
2,899,899 - AZOBR_RS13670 0.12 -0.1
2,899,899 - AZOBR_RS13670 0.12 -0.7
2,900,048 - AZOBR_RS13670 0.78 +0.0
2,900,198 + +0.2
2,900,198 + +0.9
2,900,198 + +0.0
2,900,198 + +1.2
2,900,199 - -0.1
2,900,332 - AZOBR_RS13675 0.28 +0.3
2,900,464 - AZOBR_RS13675 0.65 -0.3
2,900,464 - AZOBR_RS13675 0.65 +1.0
2,900,464 - AZOBR_RS13675 0.65 -1.8
2,900,464 - AZOBR_RS13675 0.65 -0.3
2,900,472 + AZOBR_RS13675 0.67 -1.4
2,900,473 - AZOBR_RS13675 0.68 +0.7
2,900,538 + AZOBR_RS13675 0.86 -0.5
2,900,538 + AZOBR_RS13675 0.86 -0.4
2,900,538 + AZOBR_RS13675 0.86 -0.8
2,900,539 - AZOBR_RS13675 0.86 -0.4
2,900,539 - AZOBR_RS13675 0.86 -0.2
2,900,539 - AZOBR_RS13675 0.86 +0.6
2,900,539 - AZOBR_RS13675 0.86 +0.0
2,900,605 - -0.5
2,901,049 + AZOBR_RS13685 0.64 -0.2
2,901,050 - AZOBR_RS13685 0.64 +0.6
2,901,457 - -0.3
2,901,457 - -0.2
2,901,457 - +0.2

Or see this region's nucleotide sequence