Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS24805

Experiment: LB no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS24800 and AZOBR_RS24805 are separated by 129 nucleotidesAZOBR_RS24805 and AZOBR_RS24810 are separated by 622 nucleotides AZOBR_RS24800: AZOBR_RS24800 - hypothetical protein, at 625,719 to 628,976 _RS24800 AZOBR_RS24805: AZOBR_RS24805 - hypothetical protein, at 629,106 to 630,536 _RS24805 AZOBR_RS24810: AZOBR_RS24810 - hypothetical protein, at 631,159 to 631,833 _RS24810 Position (kb) 629 630 631Strain fitness (log2 ratio) -2 -1 0 1 2 3at 628.397 kb on + strand, within AZOBR_RS24800at 629.205 kb on - strandat 629.274 kb on + strand, within AZOBR_RS24805at 629.274 kb on + strand, within AZOBR_RS24805at 629.274 kb on + strand, within AZOBR_RS24805at 629.274 kb on + strand, within AZOBR_RS24805at 629.526 kb on + strand, within AZOBR_RS24805at 629.526 kb on + strand, within AZOBR_RS24805at 629.527 kb on - strand, within AZOBR_RS24805at 629.622 kb on + strand, within AZOBR_RS24805at 629.622 kb on + strand, within AZOBR_RS24805at 629.623 kb on - strand, within AZOBR_RS24805at 629.755 kb on - strand, within AZOBR_RS24805at 629.943 kb on + strand, within AZOBR_RS24805at 629.982 kb on + strand, within AZOBR_RS24805at 629.982 kb on + strand, within AZOBR_RS24805at 629.982 kb on + strand, within AZOBR_RS24805at 629.982 kb on + strand, within AZOBR_RS24805at 629.983 kb on - strand, within AZOBR_RS24805at 629.983 kb on - strand, within AZOBR_RS24805at 629.983 kb on - strandat 630.067 kb on - strand, within AZOBR_RS24805at 630.067 kb on - strand, within AZOBR_RS24805at 630.330 kb on + strand, within AZOBR_RS24805at 630.330 kb on + strand, within AZOBR_RS24805at 630.330 kb on + strand, within AZOBR_RS24805at 630.330 kb on + strand, within AZOBR_RS24805at 630.330 kb on + strand, within AZOBR_RS24805at 630.330 kb on + strand, within AZOBR_RS24805at 630.330 kb on + strand, within AZOBR_RS24805at 630.331 kb on - strand, within AZOBR_RS24805at 630.331 kb on - strand, within AZOBR_RS24805at 630.331 kb on - strand, within AZOBR_RS24805at 630.426 kb on + strandat 630.447 kb on + strandat 630.816 kb on + strandat 630.816 kb on + strandat 630.853 kb on - strandat 630.853 kb on - strandat 630.973 kb on + strandat 630.973 kb on + strandat 630.974 kb on - strandat 630.974 kb on - strandat 631.285 kb on + strand, within AZOBR_RS24810at 631.286 kb on - strand, within AZOBR_RS24810

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress control
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628,397 + AZOBR_RS24800 0.82 +0.5
629,205 - -0.9
629,274 + AZOBR_RS24805 0.12 +0.1
629,274 + AZOBR_RS24805 0.12 +0.1
629,274 + AZOBR_RS24805 0.12 -0.3
629,274 + AZOBR_RS24805 0.12 -0.9
629,526 + AZOBR_RS24805 0.29 -0.6
629,526 + AZOBR_RS24805 0.29 -0.4
629,527 - AZOBR_RS24805 0.29 -0.4
629,622 + AZOBR_RS24805 0.36 -0.1
629,622 + AZOBR_RS24805 0.36 +0.1
629,623 - AZOBR_RS24805 0.36 -0.2
629,755 - AZOBR_RS24805 0.45 +0.4
629,943 + AZOBR_RS24805 0.58 -0.5
629,982 + AZOBR_RS24805 0.61 +1.2
629,982 + AZOBR_RS24805 0.61 +0.1
629,982 + AZOBR_RS24805 0.61 -0.2
629,982 + AZOBR_RS24805 0.61 +2.9
629,983 - AZOBR_RS24805 0.61 +0.3
629,983 - AZOBR_RS24805 0.61 -0.3
629,983 - +0.4
630,067 - AZOBR_RS24805 0.67 -0.3
630,067 - AZOBR_RS24805 0.67 -0.7
630,330 + AZOBR_RS24805 0.86 -0.1
630,330 + AZOBR_RS24805 0.86 -0.4
630,330 + AZOBR_RS24805 0.86 +0.0
630,330 + AZOBR_RS24805 0.86 +0.2
630,330 + AZOBR_RS24805 0.86 +0.0
630,330 + AZOBR_RS24805 0.86 -0.1
630,330 + AZOBR_RS24805 0.86 +0.1
630,331 - AZOBR_RS24805 0.86 -1.8
630,331 - AZOBR_RS24805 0.86 +0.0
630,331 - AZOBR_RS24805 0.86 -0.4
630,426 + +0.1
630,447 + +0.7
630,816 + -0.1
630,816 + -0.2
630,853 - -0.6
630,853 - -0.2
630,973 + -0.1
630,973 + +0.3
630,974 - +0.5
630,974 - +0.6
631,285 + AZOBR_RS24810 0.19 -0.4
631,286 - AZOBR_RS24810 0.19 -1.2

Or see this region's nucleotide sequence