Experiment: LB no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS22870 and AZOBR_RS22875 are separated by 57 nucleotides AZOBR_RS22875 and AZOBR_RS22880 are separated by 260 nucleotides
AZOBR_RS22870: AZOBR_RS22870 - hypothetical protein, at 140,532 to 141,854
_RS22870
AZOBR_RS22875: AZOBR_RS22875 - glucoamylase, at 141,912 to 143,708
_RS22875
AZOBR_RS22880: AZOBR_RS22880 - hypothetical protein, at 143,969 to 145,072
_RS22880
Position (kb) 141
142
143
144 Strain fitness (log2 ratio) -2
-1
0
1
2 at 141.018 kb on + strand, within AZOBR_RS22870 at 141.019 kb on - strand, within AZOBR_RS22870 at 141.097 kb on - strand, within AZOBR_RS22870 at 141.111 kb on + strand, within AZOBR_RS22870 at 141.127 kb on - strand, within AZOBR_RS22870 at 141.142 kb on - strand, within AZOBR_RS22870 at 141.142 kb on - strand, within AZOBR_RS22870 at 141.142 kb on - strand, within AZOBR_RS22870 at 141.178 kb on - strand, within AZOBR_RS22870 at 141.223 kb on - strand, within AZOBR_RS22870 at 141.454 kb on - strand, within AZOBR_RS22870 at 142.040 kb on - strand at 142.040 kb on - strand at 142.129 kb on + strand, within AZOBR_RS22875 at 142.129 kb on + strand, within AZOBR_RS22875 at 142.129 kb on + strand, within AZOBR_RS22875 at 142.129 kb on + strand, within AZOBR_RS22875 at 142.129 kb on + strand, within AZOBR_RS22875 at 142.130 kb on - strand, within AZOBR_RS22875 at 142.130 kb on - strand, within AZOBR_RS22875 at 142.130 kb on - strand, within AZOBR_RS22875 at 142.345 kb on + strand, within AZOBR_RS22875 at 142.378 kb on + strand, within AZOBR_RS22875 at 142.675 kb on + strand, within AZOBR_RS22875 at 142.675 kb on + strand, within AZOBR_RS22875 at 142.676 kb on - strand, within AZOBR_RS22875 at 142.676 kb on - strand, within AZOBR_RS22875 at 142.795 kb on + strand, within AZOBR_RS22875 at 142.796 kb on - strand, within AZOBR_RS22875 at 142.796 kb on - strand, within AZOBR_RS22875 at 142.796 kb on - strand, within AZOBR_RS22875 at 142.796 kb on - strand, within AZOBR_RS22875 at 142.796 kb on - strand, within AZOBR_RS22875 at 142.796 kb on - strand, within AZOBR_RS22875 at 142.933 kb on + strand, within AZOBR_RS22875 at 142.934 kb on - strand, within AZOBR_RS22875 at 143.071 kb on + strand, within AZOBR_RS22875 at 143.170 kb on + strand, within AZOBR_RS22875 at 143.170 kb on + strand, within AZOBR_RS22875 at 143.170 kb on + strand, within AZOBR_RS22875 at 143.170 kb on + strand, within AZOBR_RS22875 at 143.170 kb on + strand, within AZOBR_RS22875 at 143.170 kb on + strand, within AZOBR_RS22875 at 143.171 kb on - strand, within AZOBR_RS22875 at 143.171 kb on - strand, within AZOBR_RS22875 at 143.406 kb on + strand, within AZOBR_RS22875 at 143.406 kb on + strand, within AZOBR_RS22875 at 143.407 kb on - strand, within AZOBR_RS22875 at 143.686 kb on + strand at 143.686 kb on + strand at 143.841 kb on + strand at 143.841 kb on + strand at 143.842 kb on - strand at 144.360 kb on - strand, within AZOBR_RS22880 at 144.485 kb on + strand, within AZOBR_RS22880
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress control remove 141,018 + AZOBR_RS22870 0.37 -1.0 141,019 - AZOBR_RS22870 0.37 +1.9 141,097 - AZOBR_RS22870 0.43 +1.9 141,111 + AZOBR_RS22870 0.44 +0.4 141,127 - AZOBR_RS22870 0.45 +0.9 141,142 - AZOBR_RS22870 0.46 +0.9 141,142 - AZOBR_RS22870 0.46 -0.1 141,142 - AZOBR_RS22870 0.46 +1.9 141,178 - AZOBR_RS22870 0.49 -0.4 141,223 - AZOBR_RS22870 0.52 +1.4 141,454 - AZOBR_RS22870 0.70 +0.2 142,040 - -0.0 142,040 - -0.2 142,129 + AZOBR_RS22875 0.12 -0.8 142,129 + AZOBR_RS22875 0.12 -1.1 142,129 + AZOBR_RS22875 0.12 -0.1 142,129 + AZOBR_RS22875 0.12 +1.1 142,129 + AZOBR_RS22875 0.12 -0.7 142,130 - AZOBR_RS22875 0.12 -1.3 142,130 - AZOBR_RS22875 0.12 +0.1 142,130 - AZOBR_RS22875 0.12 -0.5 142,345 + AZOBR_RS22875 0.24 -0.1 142,378 + AZOBR_RS22875 0.26 +0.9 142,675 + AZOBR_RS22875 0.42 +0.1 142,675 + AZOBR_RS22875 0.42 +0.4 142,676 - AZOBR_RS22875 0.43 -0.0 142,676 - AZOBR_RS22875 0.43 +0.7 142,795 + AZOBR_RS22875 0.49 -0.2 142,796 - AZOBR_RS22875 0.49 +0.1 142,796 - AZOBR_RS22875 0.49 -2.0 142,796 - AZOBR_RS22875 0.49 -0.5 142,796 - AZOBR_RS22875 0.49 -0.3 142,796 - AZOBR_RS22875 0.49 +0.1 142,796 - AZOBR_RS22875 0.49 +0.3 142,933 + AZOBR_RS22875 0.57 -0.8 142,934 - AZOBR_RS22875 0.57 -0.2 143,071 + AZOBR_RS22875 0.64 +0.0 143,170 + AZOBR_RS22875 0.70 -1.0 143,170 + AZOBR_RS22875 0.70 +0.0 143,170 + AZOBR_RS22875 0.70 +0.0 143,170 + AZOBR_RS22875 0.70 +0.5 143,170 + AZOBR_RS22875 0.70 -0.9 143,170 + AZOBR_RS22875 0.70 -0.4 143,171 - AZOBR_RS22875 0.70 -0.8 143,171 - AZOBR_RS22875 0.70 -2.0 143,406 + AZOBR_RS22875 0.83 -1.2 143,406 + AZOBR_RS22875 0.83 +0.0 143,407 - AZOBR_RS22875 0.83 -0.2 143,686 + -0.5 143,686 + +0.1 143,841 + -0.1 143,841 + +1.9 143,842 - -0.7 144,360 - AZOBR_RS22880 0.35 -1.5 144,485 + AZOBR_RS22880 0.47 +0.1
Or see this region's nucleotide sequence