Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09840

Experiment: LB no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09830 and AZOBR_RS09835 are separated by 212 nucleotidesAZOBR_RS09835 and AZOBR_RS09840 overlap by 4 nucleotidesAZOBR_RS09840 and AZOBR_RS09845 are separated by 3 nucleotides AZOBR_RS09830: AZOBR_RS09830 - esterase, at 2,059,037 to 2,060,050 _RS09830 AZOBR_RS09835: AZOBR_RS09835 - adenosylcobinamide kinase, at 2,060,263 to 2,060,787 _RS09835 AZOBR_RS09840: AZOBR_RS09840 - cobinamide adenolsyltransferase, at 2,060,784 to 2,061,395 _RS09840 AZOBR_RS09845: AZOBR_RS09845 - cobyric acid synthase, at 2,061,399 to 2,062,856 _RS09845 Position (kb) 2060 2061 2062Strain fitness (log2 ratio) -1 0 1at 2060.359 kb on + strand, within AZOBR_RS09835at 2061.165 kb on + strand, within AZOBR_RS09840at 2061.165 kb on + strand, within AZOBR_RS09840at 2061.165 kb on + strand, within AZOBR_RS09840at 2061.165 kb on + strand, within AZOBR_RS09840at 2061.213 kb on + strand, within AZOBR_RS09840at 2061.213 kb on + strand, within AZOBR_RS09840at 2061.214 kb on - strand, within AZOBR_RS09840at 2061.709 kb on - strand, within AZOBR_RS09845at 2061.709 kb on - strand, within AZOBR_RS09845

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress control
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2,060,359 + AZOBR_RS09835 0.18 -0.1
2,061,165 + AZOBR_RS09840 0.62 +0.5
2,061,165 + AZOBR_RS09840 0.62 -0.8
2,061,165 + AZOBR_RS09840 0.62 -0.6
2,061,165 + AZOBR_RS09840 0.62 -0.4
2,061,213 + AZOBR_RS09840 0.70 -0.6
2,061,213 + AZOBR_RS09840 0.70 -0.1
2,061,214 - AZOBR_RS09840 0.70 -1.3
2,061,709 - AZOBR_RS09845 0.21 -0.4
2,061,709 - AZOBR_RS09845 0.21 +0.2

Or see this region's nucleotide sequence