Experiment: LB no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS00075 and AZOBR_RS00080 are separated by 314 nucleotides AZOBR_RS00080 and AZOBR_RS00085 are separated by 290 nucleotides AZOBR_RS00085 and AZOBR_RS00090 are separated by 161 nucleotides
AZOBR_RS00075: AZOBR_RS00075 - glycerol-3-phosphate ABC transporter substrate-binding protein, at 3,825 to 5,162
_RS00075
AZOBR_RS00080: AZOBR_RS00080 - hypothetical protein, at 5,477 to 5,824
_RS00080
AZOBR_RS00085: AZOBR_RS00085 - histidine kinase, at 6,115 to 7,206
_RS00085
AZOBR_RS00090: AZOBR_RS00090 - hypothetical protein, at 7,368 to 8,156
_RS00090
Position (kb) 6
7
8 Strain fitness (log2 ratio) -1
0
1 at 5.194 kb on + strand at 5.195 kb on - strand at 5.323 kb on + strand at 5.342 kb on + strand at 5.342 kb on + strand at 5.343 kb on - strand at 5.343 kb on - strand at 5.343 kb on - strand at 5.343 kb on - strand at 5.464 kb on + strand at 5.595 kb on + strand, within AZOBR_RS00080 at 5.595 kb on + strand, within AZOBR_RS00080 at 5.595 kb on + strand, within AZOBR_RS00080 at 5.596 kb on - strand, within AZOBR_RS00080 at 5.596 kb on - strand, within AZOBR_RS00080 at 5.596 kb on - strand, within AZOBR_RS00080 at 5.596 kb on - strand, within AZOBR_RS00080 at 5.620 kb on - strand, within AZOBR_RS00080 at 5.658 kb on + strand, within AZOBR_RS00080 at 5.658 kb on + strand, within AZOBR_RS00080 at 5.659 kb on - strand, within AZOBR_RS00080 at 5.706 kb on + strand, within AZOBR_RS00080 at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.963 kb on - strand at 5.963 kb on - strand at 7.233 kb on + strand at 7.235 kb on + strand at 7.310 kb on - strand at 7.310 kb on - strand at 7.392 kb on + strand at 7.394 kb on + strand at 7.395 kb on - strand at 7.395 kb on - strand at 7.395 kb on - strand at 7.395 kb on - strand at 7.403 kb on + strand at 7.404 kb on - strand at 7.404 kb on - strand at 7.710 kb on + strand, within AZOBR_RS00090 at 7.710 kb on + strand, within AZOBR_RS00090 at 7.710 kb on + strand, within AZOBR_RS00090 at 8.013 kb on + strand, within AZOBR_RS00090 at 8.013 kb on + strand, within AZOBR_RS00090 at 8.013 kb on + strand, within AZOBR_RS00090 at 8.014 kb on - strand, within AZOBR_RS00090 at 8.014 kb on - strand, within AZOBR_RS00090
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress control remove 5,194 + +0.2 5,195 - +0.4 5,323 + -0.4 5,342 + -0.1 5,342 + -0.1 5,343 - +0.6 5,343 - -0.2 5,343 - -1.7 5,343 - +0.3 5,464 + -0.0 5,595 + AZOBR_RS00080 0.34 -0.1 5,595 + AZOBR_RS00080 0.34 +0.0 5,595 + AZOBR_RS00080 0.34 +0.2 5,596 - AZOBR_RS00080 0.34 +0.8 5,596 - AZOBR_RS00080 0.34 -0.0 5,596 - AZOBR_RS00080 0.34 +0.8 5,596 - AZOBR_RS00080 0.34 -0.2 5,620 - AZOBR_RS00080 0.41 -0.3 5,658 + AZOBR_RS00080 0.52 +0.3 5,658 + AZOBR_RS00080 0.52 -0.1 5,659 - AZOBR_RS00080 0.52 +0.8 5,706 + AZOBR_RS00080 0.66 +0.5 5,962 + -0.6 5,962 + -0.9 5,962 + -0.3 5,962 + +0.3 5,962 + -0.3 5,962 + +0.6 5,962 + -0.7 5,962 + -1.3 5,962 + +0.8 5,963 - -0.0 5,963 - +0.4 7,233 + -0.4 7,235 + +0.3 7,310 - -1.1 7,310 - +0.2 7,392 + -0.2 7,394 + +0.3 7,395 - -0.2 7,395 - -1.0 7,395 - -0.2 7,395 - -0.4 7,403 + -0.5 7,404 - -0.9 7,404 - +0.5 7,710 + AZOBR_RS00090 0.43 +0.4 7,710 + AZOBR_RS00090 0.43 -0.1 7,710 + AZOBR_RS00090 0.43 +0.6 8,013 + AZOBR_RS00090 0.82 +0.0 8,013 + AZOBR_RS00090 0.82 +0.1 8,013 + AZOBR_RS00090 0.82 +0.3 8,014 - AZOBR_RS00090 0.82 +1.3 8,014 - AZOBR_RS00090 0.82 +0.0
Or see this region's nucleotide sequence