Experiment: McCas_H2_complete Benzethonium chloride 0.00625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS08215 and MMP_RS08220 are separated by 15 nucleotides MMP_RS08220 and MMP_RS08225 are separated by 30 nucleotides MMP_RS08225 and MMP_RS08230 are separated by 27 nucleotides MMP_RS08230 and MMP_RS08235 are separated by 106 nucleotides
MMP_RS08215: MMP_RS08215 - DUF483 domain-containing protein, at 1,546,728 to 1,547,282
_RS08215
MMP_RS08220: MMP_RS08220 - TrkA family potassium uptake protein, at 1,547,298 to 1,547,963
_RS08220
MMP_RS08225: MMP_RS08225 - RimK family alpha-L-glutamate ligase, at 1,547,994 to 1,548,800
_RS08225
MMP_RS08230: MMP_RS08230 - 50S ribosomal protein L11 methyltransferase, at 1,548,828 to 1,549,610
_RS08230
MMP_RS08235: MMP_RS08235 - hypothetical protein, at 1,549,717 to 1,549,944
_RS08235
Position (kb) 1547
1548
1549 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12 at 1547.033 kb on + strand, within MMP_RS08215 at 1547.033 kb on + strand, within MMP_RS08215 at 1547.064 kb on + strand, within MMP_RS08215 at 1547.374 kb on - strand at 1547.500 kb on - strand at 1547.501 kb on + strand at 1547.996 kb on + strand at 1548.000 kb on - strand at 1548.009 kb on + strand at 1548.017 kb on + strand at 1548.062 kb on - strand at 1548.088 kb on + strand, within MMP_RS08225 at 1548.310 kb on - strand, within MMP_RS08225 at 1548.311 kb on + strand, within MMP_RS08225 at 1548.311 kb on + strand, within MMP_RS08225 at 1548.418 kb on - strand, within MMP_RS08225 at 1548.418 kb on - strand, within MMP_RS08225 at 1548.418 kb on - strand, within MMP_RS08225 at 1548.418 kb on - strand, within MMP_RS08225 at 1548.419 kb on + strand, within MMP_RS08225 at 1548.419 kb on + strand, within MMP_RS08225 at 1548.419 kb on + strand, within MMP_RS08225 at 1548.419 kb on + strand, within MMP_RS08225 at 1548.420 kb on - strand, within MMP_RS08225 at 1548.420 kb on - strand, within MMP_RS08225 at 1548.430 kb on + strand, within MMP_RS08225 at 1548.532 kb on + strand, within MMP_RS08225 at 1549.088 kb on - strand, within MMP_RS08230 at 1549.144 kb on - strand, within MMP_RS08230 at 1549.145 kb on + strand, within MMP_RS08230 at 1549.287 kb on - strand, within MMP_RS08230 at 1549.303 kb on + strand, within MMP_RS08230 at 1549.333 kb on - strand, within MMP_RS08230 at 1549.351 kb on + strand, within MMP_RS08230 at 1549.369 kb on - strand, within MMP_RS08230 at 1549.370 kb on + strand, within MMP_RS08230 at 1549.398 kb on + strand, within MMP_RS08230 at 1549.538 kb on - strand at 1549.563 kb on - strand at 1549.576 kb on - strand at 1549.576 kb on - strand at 1549.577 kb on + strand at 1549.577 kb on + strand at 1549.656 kb on + strand at 1549.657 kb on - strand at 1549.657 kb on - strand at 1549.658 kb on + strand at 1549.658 kb on + strand at 1549.658 kb on + strand at 1549.658 kb on + strand at 1549.658 kb on + strand at 1549.714 kb on - strand at 1549.750 kb on + strand, within MMP_RS08235
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Benzethonium chloride 0.00625 mM remove 1,547,033 + MMP_RS08215 0.55 -0.7 1,547,033 + MMP_RS08215 0.55 -0.8 1,547,064 + MMP_RS08215 0.61 -1.1 1,547,374 - +0.7 1,547,500 - -0.2 1,547,501 + +0.9 1,547,996 + +1.1 1,548,000 - +0.6 1,548,009 + -0.1 1,548,017 + -0.4 1,548,062 - -2.0 1,548,088 + MMP_RS08225 0.12 -1.7 1,548,310 - MMP_RS08225 0.39 +0.1 1,548,311 + MMP_RS08225 0.39 -2.1 1,548,311 + MMP_RS08225 0.39 -0.1 1,548,418 - MMP_RS08225 0.53 +0.2 1,548,418 - MMP_RS08225 0.53 -0.0 1,548,418 - MMP_RS08225 0.53 -1.1 1,548,418 - MMP_RS08225 0.53 -0.1 1,548,419 + MMP_RS08225 0.53 -0.2 1,548,419 + MMP_RS08225 0.53 -0.5 1,548,419 + MMP_RS08225 0.53 -1.3 1,548,419 + MMP_RS08225 0.53 +0.3 1,548,420 - MMP_RS08225 0.53 +0.1 1,548,420 - MMP_RS08225 0.53 +0.7 1,548,430 + MMP_RS08225 0.54 -1.5 1,548,532 + MMP_RS08225 0.67 -0.8 1,549,088 - MMP_RS08230 0.33 -1.6 1,549,144 - MMP_RS08230 0.40 -1.1 1,549,145 + MMP_RS08230 0.40 +0.5 1,549,287 - MMP_RS08230 0.59 -1.9 1,549,303 + MMP_RS08230 0.61 -0.3 1,549,333 - MMP_RS08230 0.64 -1.3 1,549,351 + MMP_RS08230 0.67 +0.4 1,549,369 - MMP_RS08230 0.69 +0.4 1,549,370 + MMP_RS08230 0.69 -0.3 1,549,398 + MMP_RS08230 0.73 -0.3 1,549,538 - -0.4 1,549,563 - +0.4 1,549,576 - -0.4 1,549,576 - +0.2 1,549,577 + -0.8 1,549,577 + -0.2 1,549,656 + -1.9 1,549,657 - -1.8 1,549,657 - +0.8 1,549,658 + +0.4 1,549,658 + -0.1 1,549,658 + +0.3 1,549,658 + -1.0 1,549,658 + +0.2 1,549,714 - -0.5 1,549,750 + MMP_RS08235 0.14 +12.5
Or see this region's nucleotide sequence