Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01990

Experiment: McCas_H2_complete Benzethonium chloride 0.00625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01985 and MMP_RS01990 are separated by 203 nucleotidesMMP_RS01990 and MMP_RS01995 are separated by 39 nucleotidesMMP_RS01995 and MMP_RS02000 are separated by 84 nucleotides MMP_RS01985: MMP_RS01985 - F420-dependent methylenetetrahydromethanopterin dehydrogenase, at 369,232 to 370,065 _RS01985 MMP_RS01990: MMP_RS01990 - hypothetical protein, at 370,269 to 370,517 _RS01990 MMP_RS01995: MMP_RS01995 - ribonuclease VapC5, at 370,557 to 371,087 _RS01995 MMP_RS02000: MMP_RS02000 - radical SAM protein, at 371,172 to 372,545 _RS02000 Position (kb) 370 371Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10 11 12 13at 369.361 kb on - strand, within MMP_RS01985at 369.647 kb on + strand, within MMP_RS01985at 369.647 kb on + strand, within MMP_RS01985at 369.683 kb on + strand, within MMP_RS01985at 369.890 kb on + strand, within MMP_RS01985at 369.890 kb on + strand, within MMP_RS01985at 370.067 kb on + strandat 370.067 kb on + strandat 370.067 kb on + strandat 370.100 kb on - strandat 370.120 kb on - strandat 370.121 kb on + strandat 370.178 kb on - strandat 370.202 kb on + strandat 370.202 kb on + strandat 370.215 kb on - strandat 370.223 kb on - strandat 370.318 kb on - strand, within MMP_RS01990at 370.318 kb on - strand, within MMP_RS01990at 370.344 kb on + strand, within MMP_RS01990at 370.382 kb on + strand, within MMP_RS01990at 370.516 kb on + strandat 370.554 kb on - strandat 370.555 kb on + strandat 370.555 kb on + strandat 370.591 kb on - strandat 370.592 kb on + strandat 370.811 kb on - strandat 371.087 kb on - strandat 371.104 kb on - strandat 371.104 kb on - strandat 371.105 kb on + strandat 371.108 kb on - strandat 371.109 kb on + strandat 371.113 kb on + strandat 371.114 kb on - strandat 371.115 kb on + strandat 371.115 kb on + strandat 371.118 kb on - strandat 371.119 kb on + strandat 371.119 kb on + strandat 371.119 kb on + strandat 371.120 kb on - strandat 371.123 kb on - strandat 371.123 kb on - strandat 371.123 kb on - strandat 371.123 kb on - strandat 371.124 kb on + strandat 371.124 kb on + strandat 371.124 kb on + strandat 371.124 kb on + strandat 371.125 kb on - strandat 371.126 kb on + strandat 371.132 kb on + strandat 371.145 kb on + strandat 371.148 kb on - strandat 371.149 kb on + strandat 371.490 kb on - strand, within MMP_RS02000at 371.494 kb on + strand, within MMP_RS02000

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Benzethonium chloride 0.00625 mM
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369,361 - MMP_RS01985 0.15 +0.4
369,647 + MMP_RS01985 0.50 +0.6
369,647 + MMP_RS01985 0.50 +2.2
369,683 + MMP_RS01985 0.54 -0.3
369,890 + MMP_RS01985 0.79 -1.3
369,890 + MMP_RS01985 0.79 +0.1
370,067 + +0.3
370,067 + -0.0
370,067 + +0.3
370,100 - +1.2
370,120 - +1.6
370,121 + -0.3
370,178 - +0.3
370,202 + +1.2
370,202 + +1.8
370,215 - -0.5
370,223 - -1.2
370,318 - MMP_RS01990 0.20 +0.1
370,318 - MMP_RS01990 0.20 -1.2
370,344 + MMP_RS01990 0.30 -0.9
370,382 + MMP_RS01990 0.45 -0.7
370,516 + +1.2
370,554 - -2.3
370,555 + -1.2
370,555 + -0.4
370,591 - +1.2
370,592 + +0.4
370,811 - +0.4
371,087 - +1.6
371,104 - +1.2
371,104 - +0.7
371,105 + -1.9
371,108 - -0.0
371,109 + +0.8
371,113 + +0.9
371,114 - +1.2
371,115 + +1.7
371,115 + +0.7
371,118 - +0.1
371,119 + -1.9
371,119 + -0.4
371,119 + -0.4
371,120 - -0.7
371,123 - -0.6
371,123 - +0.4
371,123 - +0.1
371,123 - +0.8
371,124 + -2.2
371,124 + +0.4
371,124 + -3.6
371,124 + -0.9
371,125 - +0.4
371,126 + -0.3
371,132 + +0.9
371,145 + +13.2
371,148 - +0.3
371,149 + +0.4
371,490 - MMP_RS02000 0.23 +0.2
371,494 + MMP_RS02000 0.23 -0.6

Or see this region's nucleotide sequence