Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01360

Experiment: McCas_H2_complete Benzethonium chloride 0.00625 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS01345 and MMP_RS01350 overlap by 1 nucleotidesMMP_RS01350 and MMP_RS01355 are separated by 54 nucleotidesMMP_RS01355 and MMP_RS01360 are separated by 29 nucleotidesMMP_RS01360 and MMP_RS01365 are separated by 98 nucleotides MMP_RS01345: MMP_RS01345 - rRNA maturation protein, at 250,463 to 250,957 _RS01345 MMP_RS01350: MMP_RS01350 - DNA-directed RNA polymerase subunit P, at 250,957 to 251,097 _RS01350 MMP_RS01355: MMP_RS01355 - 50S ribosomal protein L37Ae, at 251,152 to 251,442 _RS01355 MMP_RS01360: MMP_RS01360 - ribosome assembly factor SBDS, at 251,472 to 252,176 _RS01360 MMP_RS01365: MMP_RS01365 - archaeal proteasome endopeptidase complex subunit alpha, at 252,275 to 253,054 _RS01365 Position (kb) 251 252 253Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 250.603 kb on + strandat 250.606 kb on - strandat 250.811 kb on - strandat 250.811 kb on - strandat 250.812 kb on + strandat 250.818 kb on + strandat 250.977 kb on - strandat 250.993 kb on - strandat 251.491 kb on + strandat 251.495 kb on - strandat 252.199 kb on + strandat 252.389 kb on - strand, within MMP_RS01365at 252.454 kb on - strand, within MMP_RS01365at 252.681 kb on - strand, within MMP_RS01365at 252.681 kb on - strand, within MMP_RS01365at 253.056 kb on - strandat 253.056 kb on - strandat 253.057 kb on + strandat 253.057 kb on + strandat 253.082 kb on + strandat 253.108 kb on - strandat 253.108 kb on - strandat 253.109 kb on + strandat 253.109 kb on + strandat 253.115 kb on - strandat 253.133 kb on - strandat 253.137 kb on - strandat 253.137 kb on - strandat 253.137 kb on - strandat 253.137 kb on - strandat 253.138 kb on + strandat 253.138 kb on + strandat 253.138 kb on + strandat 253.138 kb on + strandat 253.138 kb on + strandat 253.138 kb on + strandat 253.139 kb on - strandat 253.139 kb on - strandat 253.139 kb on - strandat 253.139 kb on - strandat 253.139 kb on - strandat 253.140 kb on + strandat 253.140 kb on + strandat 253.140 kb on + strandat 253.175 kb on - strandat 253.176 kb on + strandat 253.176 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Benzethonium chloride 0.00625 mM
remove
250,603 + +1.7
250,606 - +1.8
250,811 - -0.6
250,811 - +1.4
250,812 + +2.7
250,818 + +0.6
250,977 - -0.1
250,993 - +1.3
251,491 + +2.2
251,495 - -0.2
252,199 + -0.4
252,389 - MMP_RS01365 0.15 +6.2
252,454 - MMP_RS01365 0.23 +1.2
252,681 - MMP_RS01365 0.52 +1.5
252,681 - MMP_RS01365 0.52 +1.9
253,056 - +3.7
253,056 - +3.6
253,057 + +0.6
253,057 + +1.3
253,082 + +4.5
253,108 - +5.3
253,108 - +3.3
253,109 + +1.2
253,109 + +3.7
253,115 - +3.1
253,133 - +1.8
253,137 - +1.8
253,137 - +1.2
253,137 - +3.5
253,137 - +1.9
253,138 + +3.1
253,138 + +3.6
253,138 + +1.4
253,138 + +4.6
253,138 + +3.8
253,138 + +1.9
253,139 - +1.0
253,139 - +1.7
253,139 - +1.7
253,139 - +1.4
253,139 - +3.4
253,140 + +3.3
253,140 + +4.7
253,140 + +3.0
253,175 - +1.6
253,176 + +1.1
253,176 + -1.0

Or see this region's nucleotide sequence