Experiment: McCas_H2_complete Chlorate 250 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02785 and MMP_RS02790 are separated by 1 nucleotides MMP_RS02790 and MMP_RS02795 are separated by 424 nucleotides MMP_RS02795 and MMP_RS02800 are separated by 230 nucleotides MMP_RS02800 and MMP_RS02805 overlap by 14 nucleotides
MMP_RS02785: MMP_RS02785 - MarR family transcriptional regulator, at 532,365 to 532,985
_RS02785
MMP_RS02790: MMP_RS02790 - class III signal peptide-containing protein, at 532,987 to 533,208
_RS02790
MMP_RS02795: MMP_RS02795 - sulfate permease, at 533,633 to 535,291
_RS02795
MMP_RS02800: MMP_RS02800 - nucleotidyltransferase domain-containing protein, at 535,522 to 536,139
_RS02800
MMP_RS02805: MMP_RS02805 - HEPN domain-containing protein, at 536,126 to 536,635
_RS02805
Position (kb) 533
534
535
536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 532.828 kb on - strand, within MMP_RS02785 at 532.906 kb on - strand, within MMP_RS02785 at 532.922 kb on - strand, within MMP_RS02785 at 532.942 kb on + strand at 532.954 kb on - strand at 532.982 kb on + strand at 532.983 kb on - strand at 533.038 kb on - strand, within MMP_RS02790 at 533.225 kb on - strand at 533.248 kb on - strand at 533.249 kb on + strand at 533.253 kb on + strand at 533.253 kb on + strand at 533.253 kb on + strand at 533.272 kb on - strand at 533.273 kb on + strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.275 kb on + strand at 533.275 kb on + strand at 533.275 kb on + strand at 533.275 kb on + strand at 533.275 kb on + strand at 533.275 kb on + strand at 533.275 kb on + strand at 533.276 kb on - strand at 533.276 kb on - strand at 533.276 kb on - strand at 533.276 kb on - strand at 533.276 kb on - strand at 533.276 kb on - strand at 533.277 kb on + strand at 533.277 kb on + strand at 533.303 kb on - strand at 533.303 kb on - strand at 533.324 kb on - strand at 533.500 kb on - strand at 533.560 kb on + strand at 533.598 kb on - strand at 533.598 kb on - strand at 533.599 kb on + strand at 533.616 kb on - strand at 533.634 kb on - strand at 533.634 kb on - strand at 533.634 kb on - strand at 533.708 kb on + strand at 533.932 kb on - strand, within MMP_RS02795 at 533.933 kb on + strand, within MMP_RS02795 at 534.095 kb on - strand, within MMP_RS02795 at 534.096 kb on + strand, within MMP_RS02795 at 534.125 kb on - strand, within MMP_RS02795 at 534.203 kb on + strand, within MMP_RS02795 at 534.255 kb on + strand, within MMP_RS02795 at 534.464 kb on - strand, within MMP_RS02795 at 534.572 kb on - strand, within MMP_RS02795 at 534.754 kb on - strand, within MMP_RS02795 at 534.755 kb on + strand, within MMP_RS02795 at 534.760 kb on - strand, within MMP_RS02795 at 534.760 kb on - strand, within MMP_RS02795 at 534.817 kb on - strand, within MMP_RS02795 at 534.822 kb on - strand, within MMP_RS02795 at 534.822 kb on - strand, within MMP_RS02795 at 534.822 kb on - strand, within MMP_RS02795 at 534.822 kb on - strand, within MMP_RS02795 at 534.827 kb on + strand, within MMP_RS02795 at 534.996 kb on + strand, within MMP_RS02795 at 535.000 kb on - strand, within MMP_RS02795 at 535.244 kb on - strand at 535.272 kb on + strand at 535.292 kb on + strand at 535.293 kb on - strand at 535.294 kb on + strand at 535.294 kb on + strand at 535.330 kb on - strand at 535.356 kb on - strand at 535.377 kb on - strand at 535.379 kb on - strand at 535.381 kb on - strand at 535.381 kb on - strand at 535.382 kb on + strand at 535.382 kb on + strand at 535.382 kb on + strand at 535.382 kb on + strand at 535.385 kb on - strand at 535.421 kb on - strand at 535.422 kb on + strand at 535.424 kb on + strand at 535.424 kb on + strand at 535.427 kb on - strand at 535.428 kb on + strand at 535.428 kb on + strand at 535.436 kb on + strand at 535.496 kb on - strand at 535.496 kb on - strand at 535.496 kb on - strand at 535.496 kb on - strand at 535.497 kb on + strand at 535.497 kb on + strand at 535.498 kb on - strand at 535.498 kb on - strand at 535.498 kb on - strand at 535.498 kb on - strand at 535.498 kb on - strand at 535.498 kb on - strand at 535.498 kb on - strand at 535.499 kb on + strand at 535.499 kb on + strand at 535.499 kb on + strand at 535.499 kb on + strand at 535.502 kb on - strand at 535.509 kb on + strand at 535.541 kb on - strand at 535.541 kb on - strand at 535.542 kb on + strand at 535.542 kb on + strand at 535.543 kb on - strand at 535.552 kb on - strand at 535.553 kb on + strand at 535.572 kb on - strand at 535.577 kb on - strand at 535.693 kb on - strand, within MMP_RS02800 at 535.693 kb on - strand, within MMP_RS02800 at 535.696 kb on - strand, within MMP_RS02800 at 535.696 kb on - strand, within MMP_RS02800 at 535.697 kb on + strand, within MMP_RS02800 at 535.697 kb on + strand, within MMP_RS02800 at 535.697 kb on + strand, within MMP_RS02800 at 535.998 kb on + strand, within MMP_RS02800 at 536.013 kb on + strand, within MMP_RS02800 at 536.060 kb on - strand, within MMP_RS02800 at 536.144 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Chlorate 250 mM remove 532,828 - MMP_RS02785 0.75 -0.5 532,906 - MMP_RS02785 0.87 -0.8 532,922 - MMP_RS02785 0.90 +1.7 532,942 + +1.5 532,954 - +0.1 532,982 + -0.4 532,983 - -1.2 533,038 - MMP_RS02790 0.23 +0.2 533,225 - +1.3 533,248 - +2.3 533,249 + +1.1 533,253 + +2.9 533,253 + +2.2 533,253 + +0.5 533,272 - +0.9 533,273 + +1.2 533,274 - +0.7 533,274 - +0.4 533,274 - +1.0 533,274 - +0.8 533,274 - -0.2 533,274 - +0.2 533,275 + +0.4 533,275 + -0.9 533,275 + +1.9 533,275 + +1.3 533,275 + -0.7 533,275 + -0.0 533,275 + +1.9 533,276 - +0.2 533,276 - -0.8 533,276 - -0.6 533,276 - -0.5 533,276 - -0.0 533,276 - +0.3 533,277 + -1.0 533,277 + +1.5 533,303 - -0.1 533,303 - +2.4 533,324 - -0.9 533,500 - -0.6 533,560 + +1.2 533,598 - +3.2 533,598 - -0.6 533,599 + -1.1 533,616 - -0.2 533,634 - -1.2 533,634 - +0.5 533,634 - -0.0 533,708 + -0.6 533,932 - MMP_RS02795 0.18 -0.5 533,933 + MMP_RS02795 0.18 +0.6 534,095 - MMP_RS02795 0.28 +2.1 534,096 + MMP_RS02795 0.28 -0.4 534,125 - MMP_RS02795 0.30 +0.3 534,203 + MMP_RS02795 0.34 -0.9 534,255 + MMP_RS02795 0.37 +2.6 534,464 - MMP_RS02795 0.50 +2.5 534,572 - MMP_RS02795 0.57 +3.7 534,754 - MMP_RS02795 0.68 +2.8 534,755 + MMP_RS02795 0.68 -1.1 534,760 - MMP_RS02795 0.68 -2.0 534,760 - MMP_RS02795 0.68 +3.7 534,817 - MMP_RS02795 0.71 -0.2 534,822 - MMP_RS02795 0.72 +0.2 534,822 - MMP_RS02795 0.72 -0.3 534,822 - MMP_RS02795 0.72 +0.1 534,822 - MMP_RS02795 0.72 -0.7 534,827 + MMP_RS02795 0.72 +0.6 534,996 + MMP_RS02795 0.82 +0.0 535,000 - MMP_RS02795 0.82 +0.9 535,244 - +1.1 535,272 + +1.9 535,292 + +3.5 535,293 - +0.1 535,294 + +1.5 535,294 + +0.6 535,330 - +1.5 535,356 - +2.1 535,377 - -0.7 535,379 - -0.8 535,381 - -1.2 535,381 - -0.9 535,382 + +0.4 535,382 + -0.2 535,382 + -0.3 535,382 + -0.5 535,385 - +0.2 535,421 - +1.9 535,422 + -0.1 535,424 + -0.1 535,424 + -0.3 535,427 - +0.6 535,428 + -0.0 535,428 + +0.0 535,436 + +1.9 535,496 - +2.3 535,496 - +1.1 535,496 - -0.5 535,496 - -0.8 535,497 + +0.5 535,497 + -1.0 535,498 - -1.0 535,498 - -1.1 535,498 - -1.1 535,498 - -1.2 535,498 - -2.9 535,498 - -1.0 535,498 - -1.5 535,499 + -1.0 535,499 + -2.2 535,499 + -1.8 535,499 + -2.2 535,502 - -1.7 535,509 + -1.9 535,541 - -1.8 535,541 - -1.0 535,542 + -3.6 535,542 + -0.2 535,543 - -1.4 535,552 - -0.7 535,553 + -2.3 535,572 - -2.0 535,577 - +0.4 535,693 - MMP_RS02800 0.28 -2.2 535,693 - MMP_RS02800 0.28 -0.2 535,696 - MMP_RS02800 0.28 -0.2 535,696 - MMP_RS02800 0.28 -2.3 535,697 + MMP_RS02800 0.28 -2.2 535,697 + MMP_RS02800 0.28 -1.8 535,697 + MMP_RS02800 0.28 -2.1 535,998 + MMP_RS02800 0.77 +0.9 536,013 + MMP_RS02800 0.79 -1.5 536,060 - MMP_RS02800 0.87 +1.0 536,144 - +2.1
Or see this region's nucleotide sequence