Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04295

Experiment: McCas_H2_complete gold (III) chloride 0.0357142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04290 and MMP_RS04295 are separated by 90 nucleotidesMMP_RS04295 and MMP_RS04300 are separated by 260 nucleotidesMMP_RS04300 and MMP_RS04305 are separated by 281 nucleotides MMP_RS04290: MMP_RS04290 - 4Fe-4S binding protein, at 818,140 to 819,333 _RS04290 MMP_RS04295: MMP_RS04295 - CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein, at 819,424 to 821,388 _RS04295 MMP_RS04300: MMP_RS04300 - hypothetical protein, at 821,649 to 821,915 _RS04300 MMP_RS04305: MMP_RS04305 - hypothetical protein, at 822,197 to 822,490 _RS04305 Position (kb) 819 820 821 822Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 818.506 kb on + strand, within MMP_RS04290at 818.631 kb on - strand, within MMP_RS04290at 818.674 kb on + strand, within MMP_RS04290at 818.766 kb on - strand, within MMP_RS04290at 818.850 kb on - strand, within MMP_RS04290at 818.927 kb on - strand, within MMP_RS04290at 818.972 kb on - strand, within MMP_RS04290at 819.115 kb on + strand, within MMP_RS04290at 819.177 kb on + strand, within MMP_RS04290at 819.448 kb on - strandat 819.621 kb on + strand, within MMP_RS04295at 819.657 kb on - strand, within MMP_RS04295at 819.658 kb on + strand, within MMP_RS04295at 819.789 kb on + strand, within MMP_RS04295at 819.987 kb on + strand, within MMP_RS04295at 820.141 kb on - strand, within MMP_RS04295at 820.194 kb on - strand, within MMP_RS04295at 820.195 kb on + strand, within MMP_RS04295at 820.389 kb on - strand, within MMP_RS04295at 820.390 kb on + strand, within MMP_RS04295at 820.444 kb on - strand, within MMP_RS04295at 820.530 kb on + strand, within MMP_RS04295at 820.635 kb on - strand, within MMP_RS04295at 820.635 kb on - strand, within MMP_RS04295at 820.636 kb on + strand, within MMP_RS04295at 820.639 kb on - strand, within MMP_RS04295at 820.639 kb on - strand, within MMP_RS04295at 820.640 kb on + strand, within MMP_RS04295at 820.695 kb on - strand, within MMP_RS04295at 820.700 kb on + strand, within MMP_RS04295at 820.774 kb on + strand, within MMP_RS04295at 820.802 kb on - strand, within MMP_RS04295at 820.993 kb on + strand, within MMP_RS04295at 820.997 kb on - strand, within MMP_RS04295at 821.029 kb on - strand, within MMP_RS04295at 821.029 kb on - strand, within MMP_RS04295at 821.029 kb on - strand, within MMP_RS04295at 821.029 kb on - strand, within MMP_RS04295at 821.030 kb on + strand, within MMP_RS04295at 821.153 kb on - strand, within MMP_RS04295at 821.187 kb on - strand, within MMP_RS04295at 821.210 kb on + strandat 821.348 kb on - strandat 821.348 kb on - strandat 821.350 kb on - strandat 821.428 kb on + strandat 821.497 kb on - strandat 821.545 kb on + strandat 821.549 kb on + strandat 821.561 kb on + strandat 821.564 kb on - strandat 821.564 kb on - strandat 821.564 kb on - strandat 821.564 kb on - strandat 821.565 kb on + strandat 821.565 kb on + strandat 821.565 kb on + strandat 821.565 kb on + strandat 821.565 kb on + strandat 821.565 kb on + strandat 821.566 kb on - strandat 821.566 kb on - strandat 821.566 kb on - strandat 821.566 kb on - strandat 821.567 kb on + strandat 821.567 kb on + strandat 821.567 kb on + strandat 821.596 kb on - strandat 821.596 kb on - strandat 821.596 kb on - strandat 821.597 kb on + strandat 821.597 kb on + strandat 821.597 kb on + strandat 821.615 kb on + strandat 821.668 kb on + strandat 821.668 kb on + strandat 821.668 kb on + strandat 821.685 kb on - strand, within MMP_RS04300at 821.686 kb on + strand, within MMP_RS04300at 821.706 kb on - strand, within MMP_RS04300at 821.706 kb on - strand, within MMP_RS04300at 821.718 kb on + strand, within MMP_RS04300at 821.734 kb on - strand, within MMP_RS04300at 821.734 kb on - strand, within MMP_RS04300at 821.734 kb on - strand, within MMP_RS04300at 821.735 kb on + strand, within MMP_RS04300at 821.735 kb on + strand, within MMP_RS04300at 821.742 kb on + strand, within MMP_RS04300at 821.746 kb on - strand, within MMP_RS04300at 821.761 kb on + strand, within MMP_RS04300at 821.778 kb on + strand, within MMP_RS04300at 821.853 kb on - strand, within MMP_RS04300at 821.897 kb on - strandat 821.904 kb on + strandat 821.930 kb on - strandat 821.998 kb on + strandat 821.999 kb on - strandat 821.999 kb on - strandat 821.999 kb on - strandat 822.000 kb on + strandat 822.000 kb on + strandat 822.000 kb on + strandat 822.000 kb on + strandat 822.000 kb on + strandat 822.001 kb on - strandat 822.001 kb on - strandat 822.001 kb on - strandat 822.001 kb on - strandat 822.001 kb on - strandat 822.001 kb on - strandat 822.001 kb on - strandat 822.002 kb on + strandat 822.002 kb on + strandat 822.002 kb on + strandat 822.002 kb on + strandat 822.002 kb on + strandat 822.003 kb on - strandat 822.008 kb on - strandat 822.012 kb on - strandat 822.012 kb on - strandat 822.012 kb on - strandat 822.013 kb on + strandat 822.013 kb on + strandat 822.013 kb on + strandat 822.013 kb on + strandat 822.013 kb on + strandat 822.032 kb on + strandat 822.040 kb on - strandat 822.044 kb on + strandat 822.125 kb on - strandat 822.125 kb on - strandat 822.126 kb on + strandat 822.126 kb on + strandat 822.127 kb on - strandat 822.127 kb on - strandat 822.128 kb on + strandat 822.128 kb on + strandat 822.132 kb on + strandat 822.147 kb on - strandat 822.156 kb on - strandat 822.156 kb on - strandat 822.156 kb on - strandat 822.156 kb on - strandat 822.156 kb on - strandat 822.156 kb on - strandat 822.157 kb on + strandat 822.157 kb on + strandat 822.158 kb on - strandat 822.158 kb on - strandat 822.158 kb on - strandat 822.158 kb on - strandat 822.158 kb on - strandat 822.159 kb on + strandat 822.159 kb on + strandat 822.175 kb on - strandat 822.178 kb on - strandat 822.179 kb on + strandat 822.209 kb on + strandat 822.235 kb on - strand, within MMP_RS04305at 822.384 kb on - strand, within MMP_RS04305

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete gold (III) chloride 0.0357142857142857 mM
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818,506 + MMP_RS04290 0.31 -0.4
818,631 - MMP_RS04290 0.41 -1.6
818,674 + MMP_RS04290 0.45 -1.8
818,766 - MMP_RS04290 0.52 -2.4
818,850 - MMP_RS04290 0.59 -1.8
818,927 - MMP_RS04290 0.66 -1.2
818,972 - MMP_RS04290 0.70 -1.5
819,115 + MMP_RS04290 0.82 -0.5
819,177 + MMP_RS04290 0.87 -0.7
819,448 - -0.6
819,621 + MMP_RS04295 0.10 -2.4
819,657 - MMP_RS04295 0.12 -2.0
819,658 + MMP_RS04295 0.12 +0.2
819,789 + MMP_RS04295 0.19 -0.8
819,987 + MMP_RS04295 0.29 -1.3
820,141 - MMP_RS04295 0.36 -2.4
820,194 - MMP_RS04295 0.39 +0.6
820,195 + MMP_RS04295 0.39 -0.8
820,389 - MMP_RS04295 0.49 -0.3
820,390 + MMP_RS04295 0.49 -2.0
820,444 - MMP_RS04295 0.52 -1.2
820,530 + MMP_RS04295 0.56 -0.5
820,635 - MMP_RS04295 0.62 -1.0
820,635 - MMP_RS04295 0.62 -0.7
820,636 + MMP_RS04295 0.62 -1.1
820,639 - MMP_RS04295 0.62 -0.4
820,639 - MMP_RS04295 0.62 -2.3
820,640 + MMP_RS04295 0.62 -2.3
820,695 - MMP_RS04295 0.65 -2.6
820,700 + MMP_RS04295 0.65 -0.9
820,774 + MMP_RS04295 0.69 -0.7
820,802 - MMP_RS04295 0.70 -0.3
820,993 + MMP_RS04295 0.80 -0.4
820,997 - MMP_RS04295 0.80 -1.4
821,029 - MMP_RS04295 0.82 -0.6
821,029 - MMP_RS04295 0.82 -0.3
821,029 - MMP_RS04295 0.82 -1.6
821,029 - MMP_RS04295 0.82 -0.0
821,030 + MMP_RS04295 0.82 -2.2
821,153 - MMP_RS04295 0.88 -0.2
821,187 - MMP_RS04295 0.90 -1.0
821,210 + -1.7
821,348 - -0.1
821,348 - -0.3
821,350 - -0.3
821,428 + +0.3
821,497 - +2.5
821,545 + -0.5
821,549 + -1.1
821,561 + +1.5
821,564 - -0.7
821,564 - -1.9
821,564 - +0.4
821,564 - +0.6
821,565 + +0.2
821,565 + +0.6
821,565 + +0.4
821,565 + +1.4
821,565 + -2.0
821,565 + +0.4
821,566 - +0.3
821,566 - -0.8
821,566 - -0.6
821,566 - +1.7
821,567 + -0.5
821,567 + -1.5
821,567 + -0.1
821,596 - +1.8
821,596 - +0.6
821,596 - +1.1
821,597 + -0.9
821,597 + -0.4
821,597 + +0.4
821,615 + -0.7
821,668 + -0.0
821,668 + +0.9
821,668 + +0.3
821,685 - MMP_RS04300 0.13 +0.4
821,686 + MMP_RS04300 0.14 +0.7
821,706 - MMP_RS04300 0.21 +0.1
821,706 - MMP_RS04300 0.21 +0.2
821,718 + MMP_RS04300 0.26 +0.6
821,734 - MMP_RS04300 0.32 +0.3
821,734 - MMP_RS04300 0.32 +0.2
821,734 - MMP_RS04300 0.32 -1.0
821,735 + MMP_RS04300 0.32 +0.4
821,735 + MMP_RS04300 0.32 -0.7
821,742 + MMP_RS04300 0.35 +0.3
821,746 - MMP_RS04300 0.36 -1.2
821,761 + MMP_RS04300 0.42 -0.5
821,778 + MMP_RS04300 0.48 +1.3
821,853 - MMP_RS04300 0.76 +0.6
821,897 - +1.0
821,904 + +1.1
821,930 - +0.6
821,998 + +0.2
821,999 - +0.4
821,999 - -0.5
821,999 - +1.0
822,000 + +0.7
822,000 + -0.3
822,000 + -1.3
822,000 + +0.4
822,000 + -0.6
822,001 - +0.2
822,001 - -0.1
822,001 - -1.5
822,001 - +0.8
822,001 - -0.4
822,001 - +0.1
822,001 - +0.0
822,002 + -0.7
822,002 + -0.2
822,002 + +0.2
822,002 + +0.1
822,002 + -0.2
822,003 - +0.0
822,008 - -1.7
822,012 - +0.2
822,012 - -0.7
822,012 - -2.3
822,013 + -1.1
822,013 + -0.1
822,013 + -0.0
822,013 + -2.8
822,013 + +0.5
822,032 + +0.6
822,040 - -1.1
822,044 + +1.3
822,125 - +1.6
822,125 - +0.7
822,126 + +1.0
822,126 + +0.7
822,127 - +0.6
822,127 - +0.5
822,128 + +0.7
822,128 + -1.0
822,132 + +0.3
822,147 - +0.2
822,156 - +0.3
822,156 - +1.1
822,156 - +0.8
822,156 - +0.2
822,156 - +0.7
822,156 - +0.4
822,157 + -0.7
822,157 + +1.2
822,158 - +0.1
822,158 - +0.9
822,158 - -0.5
822,158 - +1.2
822,158 - +0.6
822,159 + +0.0
822,159 + +0.0
822,175 - +1.0
822,178 - -0.2
822,179 + +1.0
822,209 + -0.2
822,235 - MMP_RS04305 0.13 +1.3
822,384 - MMP_RS04305 0.64 +0.8

Or see this region's nucleotide sequence