Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18520 and AZOBR_RS18525 are separated by 40 nucleotides AZOBR_RS18525 and AZOBR_RS18530 are separated by 52 nucleotides AZOBR_RS18530 and AZOBR_RS18535 are separated by 78 nucleotides
AZOBR_RS18520: AZOBR_RS18520 - chromosome partitioning protein, at 925,046 to 925,927
_RS18520
AZOBR_RS18525: AZOBR_RS18525 - uracil-DNA glycosylase, at 925,968 to 926,504
_RS18525
AZOBR_RS18530: AZOBR_RS18530 - hypothetical protein, at 926,557 to 927,273
_RS18530
AZOBR_RS18535: AZOBR_RS18535 - LysR family transcriptional regulator, at 927,352 to 928,260
_RS18535
Position (kb) 926
927
928 Strain fitness (log2 ratio) -1
0
1 at 926.153 kb on - strand, within AZOBR_RS18525 at 926.153 kb on - strand, within AZOBR_RS18525 at 926.398 kb on + strand, within AZOBR_RS18525 at 926.399 kb on - strand, within AZOBR_RS18525 at 926.558 kb on + strand at 926.985 kb on - strand, within AZOBR_RS18530 at 926.990 kb on + strand, within AZOBR_RS18530 at 926.990 kb on + strand, within AZOBR_RS18530 at 926.991 kb on - strand, within AZOBR_RS18530 at 927.158 kb on + strand, within AZOBR_RS18530 at 927.159 kb on - strand, within AZOBR_RS18530 at 927.307 kb on + strand at 927.308 kb on - strand at 927.308 kb on - strand at 927.440 kb on + strand at 927.441 kb on - strand at 927.441 kb on - strand at 927.441 kb on - strand at 927.441 kb on - strand at 927.536 kb on + strand, within AZOBR_RS18535 at 927.536 kb on + strand, within AZOBR_RS18535 at 927.537 kb on - strand, within AZOBR_RS18535 at 927.537 kb on - strand, within AZOBR_RS18535 at 927.537 kb on - strand, within AZOBR_RS18535 at 927.653 kb on + strand, within AZOBR_RS18535 at 927.653 kb on + strand, within AZOBR_RS18535
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 926,153 - AZOBR_RS18525 0.34 -0.0 926,153 - AZOBR_RS18525 0.34 -0.1 926,398 + AZOBR_RS18525 0.80 +1.3 926,399 - AZOBR_RS18525 0.80 +0.7 926,558 + +0.4 926,985 - AZOBR_RS18530 0.60 -0.2 926,990 + AZOBR_RS18530 0.60 -0.6 926,990 + AZOBR_RS18530 0.60 -0.2 926,991 - AZOBR_RS18530 0.61 -0.6 927,158 + AZOBR_RS18530 0.84 -0.7 927,159 - AZOBR_RS18530 0.84 -0.0 927,307 + -0.1 927,308 - +0.6 927,308 - +0.4 927,440 + +0.1 927,441 - -0.2 927,441 - +0.3 927,441 - -0.0 927,441 - +0.7 927,536 + AZOBR_RS18535 0.20 -0.2 927,536 + AZOBR_RS18535 0.20 -0.2 927,537 - AZOBR_RS18535 0.20 +0.4 927,537 - AZOBR_RS18535 0.20 -0.2 927,537 - AZOBR_RS18535 0.20 +0.1 927,653 + AZOBR_RS18535 0.33 -0.3 927,653 + AZOBR_RS18535 0.33 -0.5
Or see this region's nucleotide sequence