Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02505

Experiment: McCas_H2_complete 5-Fluorouracil 0.00833333333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02500 and MMP_RS02505 are separated by 3 nucleotidesMMP_RS02505 and MMP_RS02510 overlap by 17 nucleotides MMP_RS02500: MMP_RS02500 - minichromosome maintenance protein MCM, at 465,802 to 467,826 _RS02500 MMP_RS02505: MMP_RS02505 - DUF2540 domain-containing protein, at 467,830 to 468,102 _RS02505 MMP_RS02510: MMP_RS02510 - site-specific integrase, at 468,086 to 469,072 _RS02510 Position (kb) 467 468 469Strain fitness (log2 ratio) -2 -1 0 1 2at 466.888 kb on + strand, within MMP_RS02500at 467.298 kb on + strand, within MMP_RS02500at 467.326 kb on - strand, within MMP_RS02500at 467.326 kb on - strand, within MMP_RS02500at 467.327 kb on + strand, within MMP_RS02500at 467.330 kb on - strand, within MMP_RS02500at 467.331 kb on + strand, within MMP_RS02500at 467.331 kb on + strand, within MMP_RS02500at 467.527 kb on - strand, within MMP_RS02500at 467.560 kb on - strand, within MMP_RS02500at 468.093 kb on - strandat 468.230 kb on + strand, within MMP_RS02510at 468.294 kb on + strand, within MMP_RS02510at 468.395 kb on + strand, within MMP_RS02510at 468.485 kb on - strand, within MMP_RS02510at 468.486 kb on + strand, within MMP_RS02510at 468.570 kb on - strand, within MMP_RS02510at 468.570 kb on - strand, within MMP_RS02510at 468.747 kb on + strand, within MMP_RS02510at 468.915 kb on - strand, within MMP_RS02510at 468.943 kb on + strand, within MMP_RS02510at 469.011 kb on + strandat 469.054 kb on - strandat 469.081 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete 5-Fluorouracil 0.00833333333333333 mM
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466,888 + MMP_RS02500 0.54 -1.4
467,298 + MMP_RS02500 0.74 -1.3
467,326 - MMP_RS02500 0.75 +1.5
467,326 - MMP_RS02500 0.75 -0.7
467,327 + MMP_RS02500 0.75 -1.1
467,330 - MMP_RS02500 0.75 -0.3
467,331 + MMP_RS02500 0.76 -1.0
467,331 + MMP_RS02500 0.76 -2.2
467,527 - MMP_RS02500 0.85 +0.9
467,560 - MMP_RS02500 0.87 +0.4
468,093 - +2.1
468,230 + MMP_RS02510 0.15 +1.3
468,294 + MMP_RS02510 0.21 -0.0
468,395 + MMP_RS02510 0.31 -0.5
468,485 - MMP_RS02510 0.40 -0.3
468,486 + MMP_RS02510 0.41 +0.5
468,570 - MMP_RS02510 0.49 +0.3
468,570 - MMP_RS02510 0.49 +0.3
468,747 + MMP_RS02510 0.67 -1.8
468,915 - MMP_RS02510 0.84 -0.2
468,943 + MMP_RS02510 0.87 +1.4
469,011 + +0.7
469,054 - +0.1
469,081 + +0.8

Or see this region's nucleotide sequence