Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06525

Experiment: McCas_H2_complete molybdate 45.4545454545455 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06520 and MMP_RS06525 are separated by 16 nucleotidesMMP_RS06525 and MMP_RS06530 are separated by 39 nucleotides MMP_RS06520: MMP_RS06520 - DUF1786 domain-containing protein, at 1,252,548 to 1,253,564 _RS06520 MMP_RS06525: MMP_RS06525 - YciI family protein, at 1,253,581 to 1,253,871 _RS06525 MMP_RS06530: MMP_RS06530 - bifunctional hexulose-6-phosphate synthase/ribonuclease regulator, at 1,253,911 to 1,255,227 _RS06530 Position (kb) 1253 1254Strain fitness (log2 ratio) -1 0 1 2at 1253.016 kb on - strand, within MMP_RS06520at 1253.152 kb on - strand, within MMP_RS06520at 1253.214 kb on + strand, within MMP_RS06520at 1253.380 kb on - strand, within MMP_RS06520at 1253.380 kb on - strand, within MMP_RS06520at 1253.381 kb on + strand, within MMP_RS06520at 1253.381 kb on + strand, within MMP_RS06520at 1253.441 kb on - strand, within MMP_RS06520at 1253.507 kb on + strandat 1253.569 kb on + strandat 1253.587 kb on + strandat 1253.598 kb on + strandat 1253.785 kb on - strand, within MMP_RS06525at 1253.873 kb on - strandat 1253.876 kb on + strandat 1254.182 kb on - strand, within MMP_RS06530at 1254.490 kb on - strand, within MMP_RS06530at 1254.492 kb on - strand, within MMP_RS06530at 1254.506 kb on + strand, within MMP_RS06530at 1254.506 kb on + strand, within MMP_RS06530at 1254.555 kb on - strand, within MMP_RS06530at 1254.598 kb on + strand, within MMP_RS06530at 1254.633 kb on + strand, within MMP_RS06530at 1254.652 kb on + strand, within MMP_RS06530

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete molybdate 45.4545454545455 mM
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1,253,016 - MMP_RS06520 0.46 +2.0
1,253,152 - MMP_RS06520 0.59 +1.3
1,253,214 + MMP_RS06520 0.65 -0.2
1,253,380 - MMP_RS06520 0.82 +0.6
1,253,380 - MMP_RS06520 0.82 -0.6
1,253,381 + MMP_RS06520 0.82 -0.6
1,253,381 + MMP_RS06520 0.82 +0.6
1,253,441 - MMP_RS06520 0.88 +0.4
1,253,507 + -0.1
1,253,569 + -0.0
1,253,587 + +0.1
1,253,598 + +0.5
1,253,785 - MMP_RS06525 0.70 -1.0
1,253,873 - +0.9
1,253,876 + -0.1
1,254,182 - MMP_RS06530 0.21 -0.8
1,254,490 - MMP_RS06530 0.44 -0.6
1,254,492 - MMP_RS06530 0.44 +0.5
1,254,506 + MMP_RS06530 0.45 +1.0
1,254,506 + MMP_RS06530 0.45 +0.2
1,254,555 - MMP_RS06530 0.49 -1.0
1,254,598 + MMP_RS06530 0.52 +0.1
1,254,633 + MMP_RS06530 0.55 -0.1
1,254,652 + MMP_RS06530 0.56 -0.1

Or see this region's nucleotide sequence