Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06155

Experiment: McCas_H2_complete molybdate 45.4545454545455 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06150 and MMP_RS06155 are separated by 103 nucleotidesMMP_RS06155 and MMP_RS06160 are separated by 77 nucleotidesMMP_RS06160 and MMP_RS06165 are separated by 182 nucleotides MMP_RS06150: MMP_RS06150 - hypothetical protein, at 1,180,541 to 1,182,589 _RS06150 MMP_RS06155: MMP_RS06155 - DUF4186 domain-containing protein, at 1,182,693 to 1,183,064 _RS06155 MMP_RS06160: MMP_RS06160 - hypothetical protein, at 1,183,142 to 1,183,690 _RS06160 MMP_RS06165: MMP_RS06165 - ABC transporter permease, at 1,183,873 to 1,184,634 _RS06165 Position (kb) 1182 1183 1184Strain fitness (log2 ratio) -2 -1 0 1 2at 1181.760 kb on + strand, within MMP_RS06150at 1181.880 kb on - strand, within MMP_RS06150at 1181.886 kb on - strand, within MMP_RS06150at 1181.898 kb on - strand, within MMP_RS06150at 1181.968 kb on + strand, within MMP_RS06150at 1182.141 kb on + strand, within MMP_RS06150at 1182.268 kb on - strand, within MMP_RS06150at 1182.268 kb on - strand, within MMP_RS06150at 1182.358 kb on - strand, within MMP_RS06150at 1182.359 kb on + strand, within MMP_RS06150at 1182.420 kb on - strandat 1182.420 kb on - strandat 1182.421 kb on + strandat 1182.421 kb on + strandat 1182.426 kb on + strandat 1182.456 kb on - strandat 1182.459 kb on - strandat 1182.460 kb on + strandat 1182.490 kb on - strandat 1182.491 kb on + strandat 1182.491 kb on + strandat 1182.491 kb on + strandat 1182.494 kb on - strandat 1182.522 kb on - strandat 1182.525 kb on - strandat 1182.526 kb on + strandat 1182.526 kb on + strandat 1182.638 kb on + strandat 1182.648 kb on - strandat 1182.675 kb on + strandat 1182.678 kb on + strandat 1182.688 kb on - strandat 1182.693 kb on + strandat 1182.693 kb on + strandat 1182.844 kb on - strand, within MMP_RS06155at 1182.947 kb on - strand, within MMP_RS06155at 1182.957 kb on + strand, within MMP_RS06155at 1183.073 kb on + strandat 1183.087 kb on - strandat 1183.090 kb on + strandat 1183.101 kb on - strandat 1183.118 kb on + strandat 1183.126 kb on + strandat 1183.126 kb on + strandat 1183.387 kb on + strandat 1183.477 kb on + strandat 1183.612 kb on - strandat 1183.613 kb on + strandat 1183.616 kb on - strandat 1183.616 kb on - strandat 1183.617 kb on + strandat 1183.688 kb on - strandat 1183.719 kb on - strandat 1183.719 kb on - strandat 1183.768 kb on + strandat 1183.768 kb on + strandat 1183.801 kb on - strandat 1183.826 kb on - strandat 1183.860 kb on + strandat 1183.894 kb on + strandat 1183.898 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete molybdate 45.4545454545455 mM
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1,181,760 + MMP_RS06150 0.59 +1.8
1,181,880 - MMP_RS06150 0.65 +0.4
1,181,886 - MMP_RS06150 0.66 +0.3
1,181,898 - MMP_RS06150 0.66 +0.2
1,181,968 + MMP_RS06150 0.70 -0.4
1,182,141 + MMP_RS06150 0.78 -0.5
1,182,268 - MMP_RS06150 0.84 +0.6
1,182,268 - MMP_RS06150 0.84 +0.8
1,182,358 - MMP_RS06150 0.89 -0.2
1,182,359 + MMP_RS06150 0.89 +0.4
1,182,420 - +0.3
1,182,420 - -0.1
1,182,421 + +0.4
1,182,421 + -0.1
1,182,426 + +0.0
1,182,456 - -0.6
1,182,459 - -1.9
1,182,460 + +0.3
1,182,490 - -0.2
1,182,491 + +0.8
1,182,491 + +0.3
1,182,491 + +0.1
1,182,494 - +1.8
1,182,522 - +0.5
1,182,525 - +0.2
1,182,526 + -0.6
1,182,526 + +0.1
1,182,638 + +0.6
1,182,648 - +0.7
1,182,675 + +0.7
1,182,678 + +0.6
1,182,688 - +0.4
1,182,693 + -0.9
1,182,693 + -0.4
1,182,844 - MMP_RS06155 0.41 -1.0
1,182,947 - MMP_RS06155 0.68 -0.4
1,182,957 + MMP_RS06155 0.71 -0.4
1,183,073 + +0.4
1,183,087 - -1.3
1,183,090 + -0.2
1,183,101 - -0.6
1,183,118 + +0.2
1,183,126 + +1.1
1,183,126 + +1.4
1,183,387 + -0.2
1,183,477 + +1.6
1,183,612 - -0.1
1,183,613 + -0.8
1,183,616 - +0.3
1,183,616 - -1.2
1,183,617 + +1.8
1,183,688 - -1.5
1,183,719 - -0.3
1,183,719 - +0.3
1,183,768 + +0.8
1,183,768 + -0.5
1,183,801 - +0.3
1,183,826 - -0.8
1,183,860 + -0.6
1,183,894 + -0.7
1,183,898 - -0.7

Or see this region's nucleotide sequence