Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04325

Experiment: McCas_H2_complete molybdate 45.4545454545455 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04320 and MMP_RS04325 are separated by 123 nucleotidesMMP_RS04325 and MMP_RS04330 are separated by 0 nucleotides MMP_RS04320: MMP_RS04320 - uroporphyrinogen decarboxylase family protein, at 823,802 to 824,893 _RS04320 MMP_RS04325: MMP_RS04325 - MtaA/CmuA family methyltransferase, at 825,017 to 826,045 _RS04325 MMP_RS04330: MMP_RS04330 - ASKHA domain-containing protein, at 826,046 to 827,824 _RS04330 Position (kb) 825 826 827Strain fitness (log2 ratio) -2 -1 0 1at 824.026 kb on + strand, within MMP_RS04320at 824.078 kb on + strand, within MMP_RS04320at 824.088 kb on - strand, within MMP_RS04320at 824.224 kb on - strand, within MMP_RS04320at 824.299 kb on + strand, within MMP_RS04320at 824.320 kb on - strand, within MMP_RS04320at 824.395 kb on - strand, within MMP_RS04320at 824.428 kb on + strand, within MMP_RS04320at 824.428 kb on + strand, within MMP_RS04320at 824.428 kb on + strand, within MMP_RS04320at 824.462 kb on - strand, within MMP_RS04320at 824.462 kb on - strand, within MMP_RS04320at 824.463 kb on + strand, within MMP_RS04320at 824.466 kb on - strand, within MMP_RS04320at 824.487 kb on - strand, within MMP_RS04320at 824.487 kb on - strand, within MMP_RS04320at 824.556 kb on - strand, within MMP_RS04320at 824.569 kb on + strand, within MMP_RS04320at 824.710 kb on - strand, within MMP_RS04320at 824.711 kb on + strand, within MMP_RS04320at 824.711 kb on + strand, within MMP_RS04320at 824.865 kb on - strandat 824.984 kb on + strandat 824.986 kb on + strandat 825.084 kb on - strandat 825.085 kb on + strandat 825.106 kb on - strandat 825.142 kb on + strand, within MMP_RS04325at 825.249 kb on - strand, within MMP_RS04325at 825.249 kb on - strand, within MMP_RS04325at 825.250 kb on + strand, within MMP_RS04325at 825.310 kb on - strand, within MMP_RS04325at 825.589 kb on + strand, within MMP_RS04325at 825.589 kb on + strand, within MMP_RS04325at 825.731 kb on + strand, within MMP_RS04325at 825.731 kb on + strand, within MMP_RS04325at 825.798 kb on - strand, within MMP_RS04325at 825.814 kb on - strand, within MMP_RS04325at 826.066 kb on - strandat 826.075 kb on - strandat 826.076 kb on + strandat 826.078 kb on - strandat 826.235 kb on - strand, within MMP_RS04330at 826.314 kb on - strand, within MMP_RS04330at 826.461 kb on - strand, within MMP_RS04330at 826.558 kb on + strand, within MMP_RS04330at 826.619 kb on + strand, within MMP_RS04330at 826.630 kb on + strand, within MMP_RS04330at 826.630 kb on + strand, within MMP_RS04330at 826.630 kb on + strand, within MMP_RS04330at 826.645 kb on - strand, within MMP_RS04330at 826.683 kb on - strand, within MMP_RS04330at 826.845 kb on + strand, within MMP_RS04330at 826.926 kb on + strand, within MMP_RS04330at 826.971 kb on - strand, within MMP_RS04330at 826.981 kb on - strand, within MMP_RS04330at 826.982 kb on + strand, within MMP_RS04330at 827.030 kb on + strand, within MMP_RS04330at 827.030 kb on + strand, within MMP_RS04330

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete molybdate 45.4545454545455 mM
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824,026 + MMP_RS04320 0.21 +0.5
824,078 + MMP_RS04320 0.25 -0.8
824,088 - MMP_RS04320 0.26 +1.1
824,224 - MMP_RS04320 0.39 -0.1
824,299 + MMP_RS04320 0.46 +1.4
824,320 - MMP_RS04320 0.47 -0.2
824,395 - MMP_RS04320 0.54 +0.8
824,428 + MMP_RS04320 0.57 -0.1
824,428 + MMP_RS04320 0.57 -0.9
824,428 + MMP_RS04320 0.57 -0.1
824,462 - MMP_RS04320 0.60 +0.7
824,462 - MMP_RS04320 0.60 -0.2
824,463 + MMP_RS04320 0.61 -0.8
824,466 - MMP_RS04320 0.61 +0.1
824,487 - MMP_RS04320 0.63 -0.4
824,487 - MMP_RS04320 0.63 +0.1
824,556 - MMP_RS04320 0.69 +1.1
824,569 + MMP_RS04320 0.70 -0.7
824,710 - MMP_RS04320 0.83 +0.5
824,711 + MMP_RS04320 0.83 +0.3
824,711 + MMP_RS04320 0.83 -0.6
824,865 - +1.3
824,984 + -0.7
824,986 + -0.8
825,084 - +0.1
825,085 + -1.0
825,106 - -0.3
825,142 + MMP_RS04325 0.12 +0.2
825,249 - MMP_RS04325 0.23 -0.3
825,249 - MMP_RS04325 0.23 +0.3
825,250 + MMP_RS04325 0.23 -2.4
825,310 - MMP_RS04325 0.28 -0.3
825,589 + MMP_RS04325 0.56 -0.4
825,589 + MMP_RS04325 0.56 -1.6
825,731 + MMP_RS04325 0.69 +1.0
825,731 + MMP_RS04325 0.69 -2.6
825,798 - MMP_RS04325 0.76 +0.1
825,814 - MMP_RS04325 0.77 -1.4
826,066 - -0.0
826,075 - -1.7
826,076 + -0.8
826,078 - -0.8
826,235 - MMP_RS04330 0.11 -0.0
826,314 - MMP_RS04330 0.15 +1.0
826,461 - MMP_RS04330 0.23 +0.4
826,558 + MMP_RS04330 0.29 -0.5
826,619 + MMP_RS04330 0.32 +0.0
826,630 + MMP_RS04330 0.33 -1.5
826,630 + MMP_RS04330 0.33 +0.2
826,630 + MMP_RS04330 0.33 +0.1
826,645 - MMP_RS04330 0.34 -0.8
826,683 - MMP_RS04330 0.36 +0.6
826,845 + MMP_RS04330 0.45 -0.1
826,926 + MMP_RS04330 0.49 -0.1
826,971 - MMP_RS04330 0.52 -0.1
826,981 - MMP_RS04330 0.53 +0.5
826,982 + MMP_RS04330 0.53 -2.0
827,030 + MMP_RS04330 0.55 -0.7
827,030 + MMP_RS04330 0.55 -0.7

Or see this region's nucleotide sequence