Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00335

Experiment: McCas_H2_complete molybdate 45.4545454545455 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00330 and MMP_RS00335 are separated by 114 nucleotidesMMP_RS00335 and MMP_RS00340 are separated by 229 nucleotides MMP_RS00330: MMP_RS00330 - 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH, at 70,102 to 71,181 _RS00330 MMP_RS00335: MMP_RS00335 - 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH, at 71,296 to 72,372 _RS00335 MMP_RS00340: MMP_RS00340 - 5 10-methylenetetrahydromethanopterin reductase, at 72,602 to 73,564 _RS00340 Position (kb) 71 72 73Strain fitness (log2 ratio) -2 -1 0 1 2at 70.576 kb on + strandat 70.576 kb on + strandat 70.623 kb on - strandat 70.849 kb on + strandat 70.906 kb on + strandat 71.043 kb on + strandat 71.043 kb on + strandat 71.043 kb on + strandat 71.205 kb on - strandat 71.590 kb on + strand, within MMP_RS00335at 71.833 kb on - strand, within MMP_RS00335at 72.007 kb on - strand, within MMP_RS00335at 72.183 kb on - strand, within MMP_RS00335at 72.256 kb on + strand, within MMP_RS00335at 72.503 kb on - strandat 72.541 kb on + strandat 72.541 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete molybdate 45.4545454545455 mM
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70,576 + +1.1
70,576 + +1.9
70,623 - +0.1
70,849 + -2.1
70,906 + +1.9
71,043 + -0.6
71,043 + +1.9
71,043 + -0.5
71,205 - +0.4
71,590 + MMP_RS00335 0.27 -0.4
71,833 - MMP_RS00335 0.50 -0.6
72,007 - MMP_RS00335 0.66 +0.2
72,183 - MMP_RS00335 0.82 -2.2
72,256 + MMP_RS00335 0.89 +0.1
72,503 - -0.6
72,541 + -0.9
72,541 + +1.6

Or see this region's nucleotide sequence