Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS31365

Experiment: DMSO control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS31365 and AZOBR_RS31370 are separated by 487 nucleotides AZOBR_RS31365: AZOBR_RS31365 - hypothetical protein, at 404,383 to 404,577 _RS31365 AZOBR_RS31370: AZOBR_RS31370 - mannonate dehydratase, at 405,065 to 406,261 _RS31370 Position (kb) 404 405Strain fitness (log2 ratio) -1 0 1at 404.707 kb on + strandat 404.923 kb on + strandat 404.923 kb on + strandat 404.924 kb on - strandat 404.924 kb on - strandat 404.925 kb on + strandat 404.926 kb on - strandat 404.926 kb on - strandat 404.926 kb on - strandat 405.290 kb on - strand, within AZOBR_RS31370

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
remove
404,707 + -0.1
404,923 + +0.3
404,923 + -0.3
404,924 - +0.8
404,924 - +0.2
404,925 + -0.2
404,926 - -1.4
404,926 - -1.0
404,926 - -0.2
405,290 - AZOBR_RS31370 0.19 +0.4

Or see this region's nucleotide sequence