Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30660

Experiment: DMSO control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS30655 and AZOBR_RS30660 are separated by 513 nucleotidesAZOBR_RS30660 and AZOBR_RS30665 are separated by 127 nucleotides AZOBR_RS30655: AZOBR_RS30655 - TonB-dependent receptor, at 232,734 to 234,671 _RS30655 AZOBR_RS30660: AZOBR_RS30660 - hypothetical protein, at 235,185 to 235,586 _RS30660 AZOBR_RS30665: AZOBR_RS30665 - hypothetical protein, at 235,714 to 236,916 _RS30665 Position (kb) 235 236Strain fitness (log2 ratio) -1 0 1at 234.229 kb on + strand, within AZOBR_RS30655at 234.230 kb on - strand, within AZOBR_RS30655at 234.230 kb on - strand, within AZOBR_RS30655at 234.230 kb on - strand, within AZOBR_RS30655at 234.268 kb on + strand, within AZOBR_RS30655at 234.268 kb on + strand, within AZOBR_RS30655at 234.269 kb on - strand, within AZOBR_RS30655at 234.299 kb on - strand, within AZOBR_RS30655at 234.422 kb on - strand, within AZOBR_RS30655at 234.422 kb on - strandat 234.535 kb on + strandat 235.585 kb on - strandat 235.914 kb on - strand, within AZOBR_RS30665at 236.138 kb on + strand, within AZOBR_RS30665at 236.138 kb on + strand, within AZOBR_RS30665

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
remove
234,229 + AZOBR_RS30655 0.77 -0.3
234,230 - AZOBR_RS30655 0.77 +0.3
234,230 - AZOBR_RS30655 0.77 -0.4
234,230 - AZOBR_RS30655 0.77 -1.4
234,268 + AZOBR_RS30655 0.79 +0.3
234,268 + AZOBR_RS30655 0.79 +0.0
234,269 - AZOBR_RS30655 0.79 +0.9
234,299 - AZOBR_RS30655 0.81 +0.7
234,422 - AZOBR_RS30655 0.87 -0.4
234,422 - +0.2
234,535 + +0.5
235,585 - +0.2
235,914 - AZOBR_RS30665 0.17 +0.1
236,138 + AZOBR_RS30665 0.35 +0.1
236,138 + AZOBR_RS30665 0.35 +0.1

Or see this region's nucleotide sequence