Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30270

Experiment: DMSO control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS30260 and AZOBR_RS30265 are separated by 5 nucleotidesAZOBR_RS30265 and AZOBR_RS30270 overlap by 14 nucleotidesAZOBR_RS30270 and AZOBR_RS30275 are separated by 9 nucleotides AZOBR_RS30260: AZOBR_RS30260 - hypothetical protein, at 132,620 to 135,967 _RS30260 AZOBR_RS30265: AZOBR_RS30265 - hypothetical protein, at 135,973 to 136,311 _RS30265 AZOBR_RS30270: AZOBR_RS30270 - DNA polymerase III subunit beta, at 136,298 to 136,603 _RS30270 AZOBR_RS30275: AZOBR_RS30275 - hypothetical protein, at 136,613 to 139,495 _RS30275 Position (kb) 136 137Strain fitness (log2 ratio) -1 0 1at 136.615 kb on - strandat 136.615 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
remove
136,615 - -1.0
136,615 - +0.4

Or see this region's nucleotide sequence