Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27180 and AZOBR_RS27185 overlap by 8 nucleotides AZOBR_RS27185 and AZOBR_RS27190 overlap by 4 nucleotides AZOBR_RS27190 and AZOBR_RS27200 are separated by 376 nucleotides
AZOBR_RS27180: AZOBR_RS27180 - hypothetical protein, at 244,907 to 245,269
_RS27180
AZOBR_RS27185: AZOBR_RS27185 - hypothetical protein, at 245,262 to 245,606
_RS27185
AZOBR_RS27190: AZOBR_RS27190 - hypothetical protein, at 245,603 to 245,980
_RS27190
AZOBR_RS27200: AZOBR_RS27200 - hypothetical protein, at 246,357 to 246,836
_RS27200
Position (kb) 245
246 Strain fitness (log2 ratio) -1
0
1 at 244.841 kb on - strand at 244.910 kb on + strand at 244.999 kb on - strand, within AZOBR_RS27180 at 245.055 kb on + strand, within AZOBR_RS27180 at 245.055 kb on + strand, within AZOBR_RS27180 at 245.056 kb on - strand, within AZOBR_RS27180 at 245.056 kb on - strand, within AZOBR_RS27180 at 245.056 kb on - strand, within AZOBR_RS27180 at 245.056 kb on - strand, within AZOBR_RS27180 at 245.056 kb on - strand, within AZOBR_RS27180 at 245.056 kb on - strand, within AZOBR_RS27180 at 245.214 kb on + strand, within AZOBR_RS27180 at 245.214 kb on + strand, within AZOBR_RS27180 at 245.215 kb on - strand, within AZOBR_RS27180
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 244,841 - -0.0 244,910 + -0.1 244,999 - AZOBR_RS27180 0.25 -0.2 245,055 + AZOBR_RS27180 0.41 -0.2 245,055 + AZOBR_RS27180 0.41 +0.1 245,056 - AZOBR_RS27180 0.41 -0.3 245,056 - AZOBR_RS27180 0.41 -0.1 245,056 - AZOBR_RS27180 0.41 -1.1 245,056 - AZOBR_RS27180 0.41 +0.0 245,056 - AZOBR_RS27180 0.41 +0.2 245,056 - AZOBR_RS27180 0.41 -0.0 245,214 + AZOBR_RS27180 0.85 +0.4 245,214 + AZOBR_RS27180 0.85 -0.1 245,215 - AZOBR_RS27180 0.85 -0.7
Or see this region's nucleotide sequence