Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS24885

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS24875 and AZOBR_RS24880 are separated by 14 nucleotidesAZOBR_RS24880 and AZOBR_RS24885 are separated by 90 nucleotidesAZOBR_RS24885 and AZOBR_RS24890 are separated by 109 nucleotidesAZOBR_RS24890 and AZOBR_RS24895 are separated by 10 nucleotides AZOBR_RS24875: AZOBR_RS24875 - hypothetical protein, at 645,450 to 645,764 _RS24875 AZOBR_RS24880: AZOBR_RS24880 - hypothetical protein, at 645,779 to 646,435 _RS24880 AZOBR_RS24885: AZOBR_RS24885 - hypothetical protein, at 646,526 to 646,717 _RS24885 AZOBR_RS24890: AZOBR_RS24890 - hypothetical protein, at 646,827 to 647,624 _RS24890 AZOBR_RS24895: AZOBR_RS24895 - hypothetical protein, at 647,635 to 648,450 _RS24895 Position (kb) 646 647Strain fitness (log2 ratio) -1 0 1 2 3at 645.645 kb on + strand, within AZOBR_RS24875at 645.646 kb on - strand, within AZOBR_RS24875at 645.646 kb on - strand, within AZOBR_RS24875at 645.646 kb on - strand, within AZOBR_RS24875at 645.646 kb on - strand, within AZOBR_RS24875at 645.646 kb on - strand, within AZOBR_RS24875at 645.646 kb on - strand, within AZOBR_RS24875at 645.711 kb on + strand, within AZOBR_RS24875at 645.712 kb on - strand, within AZOBR_RS24875at 645.712 kb on - strand, within AZOBR_RS24875at 645.777 kb on + strandat 645.778 kb on - strandat 645.778 kb on - strandat 645.781 kb on - strandat 645.786 kb on + strandat 645.787 kb on - strandat 645.787 kb on - strandat 645.815 kb on + strandat 645.831 kb on + strandat 645.832 kb on - strandat 645.836 kb on + strandat 645.836 kb on + strandat 645.836 kb on + strandat 645.836 kb on + strandat 645.836 kb on + strandat 645.836 kb on + strandat 645.837 kb on - strandat 645.861 kb on + strand, within AZOBR_RS24880at 645.861 kb on + strand, within AZOBR_RS24880at 645.862 kb on - strand, within AZOBR_RS24880at 645.862 kb on - strand, within AZOBR_RS24880at 645.862 kb on - strand, within AZOBR_RS24880at 645.912 kb on - strand, within AZOBR_RS24880at 645.912 kb on - strand, within AZOBR_RS24880at 645.981 kb on + strand, within AZOBR_RS24880at 645.981 kb on + strand, within AZOBR_RS24880at 645.982 kb on - strand, within AZOBR_RS24880at 646.023 kb on + strand, within AZOBR_RS24880at 646.023 kb on + strand, within AZOBR_RS24880at 646.023 kb on + strand, within AZOBR_RS24880at 646.024 kb on - strand, within AZOBR_RS24880at 646.024 kb on - strand, within AZOBR_RS24880at 646.135 kb on + strand, within AZOBR_RS24880at 646.136 kb on - strand, within AZOBR_RS24880at 646.262 kb on + strand, within AZOBR_RS24880at 646.284 kb on + strand, within AZOBR_RS24880at 646.284 kb on + strand, within AZOBR_RS24880at 646.284 kb on + strand, within AZOBR_RS24880at 646.284 kb on + strand, within AZOBR_RS24880at 646.284 kb on + strand, within AZOBR_RS24880at 646.284 kb on + strand, within AZOBR_RS24880at 646.285 kb on - strand, within AZOBR_RS24880at 646.285 kb on - strand, within AZOBR_RS24880at 646.285 kb on - strand, within AZOBR_RS24880at 646.373 kb on + strandat 646.416 kb on - strandat 646.463 kb on + strandat 646.502 kb on + strandat 646.506 kb on + strandat 646.507 kb on - strandat 646.537 kb on + strandat 646.537 kb on + strandat 646.538 kb on - strandat 646.538 kb on - strandat 646.538 kb on - strandat 646.774 kb on + strandat 646.774 kb on + strandat 646.775 kb on - strandat 646.817 kb on + strandat 647.051 kb on + strand, within AZOBR_RS24890at 647.051 kb on + strand, within AZOBR_RS24890at 647.052 kb on - strand, within AZOBR_RS24890at 647.103 kb on + strand, within AZOBR_RS24890at 647.103 kb on + strand, within AZOBR_RS24890at 647.103 kb on + strand, within AZOBR_RS24890at 647.103 kb on + strand, within AZOBR_RS24890at 647.103 kb on + strand, within AZOBR_RS24890at 647.103 kb on + strand, within AZOBR_RS24890at 647.103 kb on + strand, within AZOBR_RS24890at 647.103 kb on + strand, within AZOBR_RS24890at 647.103 kb on + strand, within AZOBR_RS24890at 647.103 kb on + strand, within AZOBR_RS24890at 647.103 kb on + strand, within AZOBR_RS24890at 647.103 kb on + strand, within AZOBR_RS24890at 647.103 kb on + strand, within AZOBR_RS24890at 647.104 kb on - strand, within AZOBR_RS24890at 647.104 kb on - strand, within AZOBR_RS24890at 647.104 kb on - strand, within AZOBR_RS24890at 647.104 kb on - strand, within AZOBR_RS24890at 647.104 kb on - strand, within AZOBR_RS24890at 647.104 kb on - strand, within AZOBR_RS24890at 647.104 kb on - strand, within AZOBR_RS24890at 647.104 kb on - strand, within AZOBR_RS24890at 647.104 kb on - strand, within AZOBR_RS24890at 647.104 kb on - strand, within AZOBR_RS24890at 647.577 kb on - strandat 647.607 kb on + strandat 647.607 kb on + strandat 647.607 kb on + strandat 647.608 kb on - strandat 647.664 kb on + strandat 647.665 kb on - strandat 647.665 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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645,645 + AZOBR_RS24875 0.62 +1.7
645,646 - AZOBR_RS24875 0.62 +3.7
645,646 - AZOBR_RS24875 0.62 +0.7
645,646 - AZOBR_RS24875 0.62 +0.4
645,646 - AZOBR_RS24875 0.62 +0.1
645,646 - AZOBR_RS24875 0.62 +0.4
645,646 - AZOBR_RS24875 0.62 +0.1
645,711 + AZOBR_RS24875 0.83 +1.7
645,712 - AZOBR_RS24875 0.83 -0.3
645,712 - AZOBR_RS24875 0.83 +0.5
645,777 + +1.7
645,778 - -1.1
645,778 - -0.4
645,781 - -0.1
645,786 + -0.9
645,787 - +0.4
645,787 - -0.2
645,815 + -0.0
645,831 + -0.3
645,832 - +0.1
645,836 + +1.7
645,836 + -0.3
645,836 + -0.9
645,836 + +0.7
645,836 + +0.5
645,836 + +0.2
645,837 - -1.0
645,861 + AZOBR_RS24880 0.12 +0.7
645,861 + AZOBR_RS24880 0.12 -0.9
645,862 - AZOBR_RS24880 0.13 +1.2
645,862 - AZOBR_RS24880 0.13 +0.4
645,862 - AZOBR_RS24880 0.13 -0.0
645,912 - AZOBR_RS24880 0.20 +0.6
645,912 - AZOBR_RS24880 0.20 +0.1
645,981 + AZOBR_RS24880 0.31 +1.7
645,981 + AZOBR_RS24880 0.31 +0.7
645,982 - AZOBR_RS24880 0.31 +0.3
646,023 + AZOBR_RS24880 0.37 +0.4
646,023 + AZOBR_RS24880 0.37 +1.1
646,023 + AZOBR_RS24880 0.37 -0.1
646,024 - AZOBR_RS24880 0.37 +0.7
646,024 - AZOBR_RS24880 0.37 +0.0
646,135 + AZOBR_RS24880 0.54 +0.7
646,136 - AZOBR_RS24880 0.54 +0.1
646,262 + AZOBR_RS24880 0.74 +1.7
646,284 + AZOBR_RS24880 0.77 -0.9
646,284 + AZOBR_RS24880 0.77 +1.7
646,284 + AZOBR_RS24880 0.77 +1.7
646,284 + AZOBR_RS24880 0.77 +1.7
646,284 + AZOBR_RS24880 0.77 +1.7
646,284 + AZOBR_RS24880 0.77 +0.3
646,285 - AZOBR_RS24880 0.77 +0.7
646,285 - AZOBR_RS24880 0.77 -0.1
646,285 - AZOBR_RS24880 0.77 +1.7
646,373 + -0.1
646,416 - +0.1
646,463 + +0.4
646,502 + -0.2
646,506 + +1.7
646,507 - -0.3
646,537 + +0.7
646,537 + +1.7
646,538 - -0.0
646,538 - -0.0
646,538 - +0.8
646,774 + +0.7
646,774 + -0.3
646,775 - +0.1
646,817 + +0.3
647,051 + AZOBR_RS24890 0.28 -0.1
647,051 + AZOBR_RS24890 0.28 +1.0
647,052 - AZOBR_RS24890 0.28 -0.3
647,103 + AZOBR_RS24890 0.35 +0.1
647,103 + AZOBR_RS24890 0.35 -0.3
647,103 + AZOBR_RS24890 0.35 -1.1
647,103 + AZOBR_RS24890 0.35 -0.6
647,103 + AZOBR_RS24890 0.35 -0.1
647,103 + AZOBR_RS24890 0.35 +0.7
647,103 + AZOBR_RS24890 0.35 -0.5
647,103 + AZOBR_RS24890 0.35 -0.9
647,103 + AZOBR_RS24890 0.35 -0.3
647,103 + AZOBR_RS24890 0.35 +0.4
647,103 + AZOBR_RS24890 0.35 -0.7
647,103 + AZOBR_RS24890 0.35 +0.2
647,103 + AZOBR_RS24890 0.35 +0.6
647,104 - AZOBR_RS24890 0.35 -0.9
647,104 - AZOBR_RS24890 0.35 -0.4
647,104 - AZOBR_RS24890 0.35 -0.6
647,104 - AZOBR_RS24890 0.35 +2.3
647,104 - AZOBR_RS24890 0.35 +0.1
647,104 - AZOBR_RS24890 0.35 -0.8
647,104 - AZOBR_RS24890 0.35 -0.4
647,104 - AZOBR_RS24890 0.35 +0.1
647,104 - AZOBR_RS24890 0.35 -0.0
647,104 - AZOBR_RS24890 0.35 -0.1
647,577 - -0.1
647,607 + +1.0
647,607 + +1.7
647,607 + -0.3
647,608 - -0.5
647,664 + -0.9
647,665 - +0.1
647,665 - -0.5

Or see this region's nucleotide sequence