Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS24260 and AZOBR_RS22255 are separated by 176 nucleotides AZOBR_RS22255 and AZOBR_RS24265 are separated by 166 nucleotides AZOBR_RS24265 and AZOBR_RS24270 are separated by 40 nucleotides
AZOBR_RS24260: AZOBR_RS24260 - methylmalonyl-CoA mutase, at 487,484 to 488,896
_RS24260
AZOBR_RS22255: AZOBR_RS22255 - cobalamin, at 489,073 to 489,324
_RS22255
AZOBR_RS24265: AZOBR_RS24265 - hypothetical protein, at 489,491 to 489,814
_RS24265
AZOBR_RS24270: AZOBR_RS24270 - LysR family transcriptional regulator, at 489,855 to 490,760
_RS24270
Position (kb) 489
490 Strain fitness (log2 ratio) -1
0
1 at 488.760 kb on + strand at 488.760 kb on + strand at 488.761 kb on - strand at 488.941 kb on + strand at 489.071 kb on + strand at 489.071 kb on + strand at 489.072 kb on - strand at 489.072 kb on - strand at 489.072 kb on - strand at 489.072 kb on - strand at 489.077 kb on - strand at 489.857 kb on - strand at 490.015 kb on + strand, within AZOBR_RS24270 at 490.015 kb on + strand, within AZOBR_RS24270 at 490.015 kb on + strand, within AZOBR_RS24270 at 490.015 kb on + strand, within AZOBR_RS24270 at 490.015 kb on + strand, within AZOBR_RS24270 at 490.015 kb on + strand, within AZOBR_RS24270 at 490.016 kb on - strand, within AZOBR_RS24270 at 490.016 kb on - strand, within AZOBR_RS24270 at 490.016 kb on - strand at 490.016 kb on - strand, within AZOBR_RS24270 at 490.066 kb on - strand, within AZOBR_RS24270 at 490.066 kb on - strand, within AZOBR_RS24270 at 490.147 kb on + strand, within AZOBR_RS24270 at 490.147 kb on + strand, within AZOBR_RS24270 at 490.148 kb on - strand, within AZOBR_RS24270 at 490.148 kb on - strand, within AZOBR_RS24270 at 490.148 kb on - strand, within AZOBR_RS24270 at 490.148 kb on - strand, within AZOBR_RS24270 at 490.177 kb on + strand, within AZOBR_RS24270 at 490.177 kb on + strand, within AZOBR_RS24270 at 490.270 kb on + strand, within AZOBR_RS24270 at 490.270 kb on + strand, within AZOBR_RS24270 at 490.450 kb on + strand, within AZOBR_RS24270 at 490.450 kb on + strand, within AZOBR_RS24270 at 490.450 kb on + strand, within AZOBR_RS24270 at 490.451 kb on - strand, within AZOBR_RS24270
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 488,760 + +0.5 488,760 + -0.4 488,761 - +0.2 488,941 + +0.4 489,071 + -1.3 489,071 + +0.2 489,072 - -0.3 489,072 - +0.3 489,072 - +0.2 489,072 - -0.2 489,077 - +0.2 489,857 - -0.4 490,015 + AZOBR_RS24270 0.18 +0.4 490,015 + AZOBR_RS24270 0.18 +0.3 490,015 + AZOBR_RS24270 0.18 -0.1 490,015 + AZOBR_RS24270 0.18 +0.1 490,015 + AZOBR_RS24270 0.18 -0.0 490,015 + AZOBR_RS24270 0.18 +0.6 490,016 - AZOBR_RS24270 0.18 +0.2 490,016 - AZOBR_RS24270 0.18 -0.2 490,016 - -0.3 490,016 - AZOBR_RS24270 0.18 -0.8 490,066 - AZOBR_RS24270 0.23 -0.5 490,066 - AZOBR_RS24270 0.23 +0.8 490,147 + AZOBR_RS24270 0.32 -0.1 490,147 + AZOBR_RS24270 0.32 -0.3 490,148 - AZOBR_RS24270 0.32 -0.3 490,148 - AZOBR_RS24270 0.32 +0.2 490,148 - AZOBR_RS24270 0.32 +0.1 490,148 - AZOBR_RS24270 0.32 -0.3 490,177 + AZOBR_RS24270 0.36 +0.4 490,177 + AZOBR_RS24270 0.36 +1.7 490,270 + AZOBR_RS24270 0.46 +0.5 490,270 + AZOBR_RS24270 0.46 +0.3 490,450 + AZOBR_RS24270 0.66 -0.5 490,450 + AZOBR_RS24270 0.66 +0.7 490,450 + AZOBR_RS24270 0.66 +0.5 490,451 - AZOBR_RS24270 0.66 +0.7
Or see this region's nucleotide sequence