Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS16020

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS16015 and AZOBR_RS16020 are separated by 10 nucleotidesAZOBR_RS16020 and AZOBR_RS16025 are separated by 2 nucleotides AZOBR_RS16015: AZOBR_RS16015 - 3-phosphoglycerate dehydrogenase, at 342,628 to 343,638 _RS16015 AZOBR_RS16020: AZOBR_RS16020 - malate dehydrogenase, at 343,649 to 344,719 _RS16020 AZOBR_RS16025: AZOBR_RS16025 - threonine synthase, at 344,722 to 345,963 _RS16025 Position (kb) 343 344 345Strain fitness (log2 ratio) -1 0 1 2at 343.031 kb on - strand, within AZOBR_RS16015at 343.168 kb on + strand, within AZOBR_RS16015at 344.013 kb on + strand, within AZOBR_RS16020at 344.020 kb on + strand, within AZOBR_RS16020at 344.021 kb on - strand, within AZOBR_RS16020at 344.021 kb on - strand, within AZOBR_RS16020at 344.346 kb on + strand, within AZOBR_RS16020at 344.346 kb on + strand, within AZOBR_RS16020at 344.347 kb on - strand, within AZOBR_RS16020at 344.559 kb on + strand, within AZOBR_RS16020at 344.736 kb on - strandat 344.873 kb on + strand, within AZOBR_RS16025at 344.873 kb on + strand, within AZOBR_RS16025at 344.874 kb on - strand, within AZOBR_RS16025at 345.093 kb on - strand, within AZOBR_RS16025

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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343,031 - AZOBR_RS16015 0.40 +0.2
343,168 + AZOBR_RS16015 0.53 +0.2
344,013 + AZOBR_RS16020 0.34 -0.4
344,020 + AZOBR_RS16020 0.35 +0.6
344,021 - AZOBR_RS16020 0.35 -0.0
344,021 - AZOBR_RS16020 0.35 +1.5
344,346 + AZOBR_RS16020 0.65 -0.0
344,346 + AZOBR_RS16020 0.65 -0.2
344,347 - AZOBR_RS16020 0.65 -0.0
344,559 + AZOBR_RS16020 0.85 +1.8
344,736 - -0.0
344,873 + AZOBR_RS16025 0.12 +0.0
344,873 + AZOBR_RS16025 0.12 +0.6
344,874 - AZOBR_RS16025 0.12 -0.4
345,093 - AZOBR_RS16025 0.30 +0.4

Or see this region's nucleotide sequence