Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS12685

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS12680 and AZOBR_RS12685 are separated by 240 nucleotidesAZOBR_RS12685 and AZOBR_RS12690 are separated by 95 nucleotidesAZOBR_RS12690 and AZOBR_RS12695 are separated by 140 nucleotides AZOBR_RS12680: AZOBR_RS12680 - MFS transporter, at 2,678,979 to 2,679,542 _RS12680 AZOBR_RS12685: AZOBR_RS12685 - ubiquinone biosynthesis protein UbiB, at 2,679,783 to 2,680,310 _RS12685 AZOBR_RS12690: AZOBR_RS12690 - disulfide bond formation protein, at 2,680,406 to 2,680,930 _RS12690 AZOBR_RS12695: AZOBR_RS12695 - tRNA-Leu, at 2,681,071 to 2,681,157 _RS12695 Position (kb) 2679 2680 2681Strain fitness (log2 ratio) -1 0 1at 2678.854 kb on + strandat 2678.872 kb on + strandat 2678.872 kb on + strandat 2678.872 kb on + strandat 2678.872 kb on + strandat 2678.873 kb on - strandat 2678.873 kb on - strandat 2678.879 kb on + strandat 2678.879 kb on + strandat 2678.879 kb on + strandat 2678.879 kb on + strandat 2678.879 kb on + strandat 2678.880 kb on - strandat 2678.880 kb on - strandat 2678.880 kb on - strandat 2678.883 kb on + strandat 2678.883 kb on + strandat 2678.884 kb on - strandat 2678.884 kb on - strandat 2678.884 kb on - strandat 2678.884 kb on - strandat 2678.884 kb on - strandat 2678.884 kb on - strandat 2678.965 kb on + strandat 2678.965 kb on + strandat 2678.965 kb on + strandat 2678.966 kb on - strandat 2678.966 kb on - strandat 2679.042 kb on + strand, within AZOBR_RS12680at 2679.043 kb on - strand, within AZOBR_RS12680at 2679.043 kb on - strand, within AZOBR_RS12680at 2679.043 kb on - strand, within AZOBR_RS12680at 2679.043 kb on - strand, within AZOBR_RS12680at 2679.121 kb on - strand, within AZOBR_RS12680at 2679.540 kb on + strandat 2679.540 kb on + strandat 2679.540 kb on + strandat 2679.636 kb on + strandat 2679.637 kb on - strandat 2679.637 kb on - strandat 2679.672 kb on + strandat 2679.673 kb on - strandat 2680.441 kb on - strandat 2680.964 kb on - strandat 2680.964 kb on - strandat 2681.264 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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2,678,854 + +0.3
2,678,872 + -0.1
2,678,872 + +0.7
2,678,872 + -0.3
2,678,872 + +0.2
2,678,873 - +0.2
2,678,873 - -0.8
2,678,879 + -0.4
2,678,879 + -0.0
2,678,879 + -0.3
2,678,879 + -0.9
2,678,879 + -0.3
2,678,880 - -1.7
2,678,880 - +1.4
2,678,880 - -0.0
2,678,883 + -0.0
2,678,883 + -0.8
2,678,884 - -0.2
2,678,884 - -0.1
2,678,884 - +0.1
2,678,884 - +1.4
2,678,884 - +0.5
2,678,884 - -0.4
2,678,965 + +0.6
2,678,965 + -0.1
2,678,965 + +0.6
2,678,966 - +0.1
2,678,966 - +0.1
2,679,042 + AZOBR_RS12680 0.11 +0.6
2,679,043 - AZOBR_RS12680 0.11 +0.4
2,679,043 - AZOBR_RS12680 0.11 -0.4
2,679,043 - AZOBR_RS12680 0.11 -0.0
2,679,043 - AZOBR_RS12680 0.11 -0.1
2,679,121 - AZOBR_RS12680 0.25 +0.1
2,679,540 + +0.4
2,679,540 + -0.0
2,679,540 + -0.1
2,679,636 + +0.3
2,679,637 - +0.1
2,679,637 - -0.1
2,679,672 + +0.5
2,679,673 - +0.6
2,680,441 - +0.2
2,680,964 - +0.0
2,680,964 - +0.8
2,681,264 - +0.0

Or see this region's nucleotide sequence