Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS10890

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS10880 and AZOBR_RS10885 are separated by 59 nucleotidesAZOBR_RS10885 and AZOBR_RS10890 are separated by 262 nucleotidesAZOBR_RS10890 and AZOBR_RS10895 are separated by 137 nucleotidesAZOBR_RS10895 and AZOBR_RS10900 are separated by 44 nucleotidesAZOBR_RS10900 and AZOBR_RS10905 are separated by 145 nucleotides AZOBR_RS10880: AZOBR_RS10880 - hypothetical protein, at 2,292,620 to 2,293,027 _RS10880 AZOBR_RS10885: AZOBR_RS10885 - hypothetical protein, at 2,293,087 to 2,293,542 _RS10885 AZOBR_RS10890: AZOBR_RS10890 - tRNA-Arg, at 2,293,805 to 2,293,881 _RS10890 AZOBR_RS10895: AZOBR_RS10895 - hypothetical protein, at 2,294,019 to 2,294,456 _RS10895 AZOBR_RS10900: AZOBR_RS10900 - tRNA-Met, at 2,294,501 to 2,294,576 _RS10900 AZOBR_RS10905: AZOBR_RS10905 - RNA polymerase sigma factor RpoD, at 2,294,722 to 2,296,683 _RS10905 Position (kb) 2293 2294Strain fitness (log2 ratio) -1 0 1at 2293.118 kb on + strandat 2293.331 kb on + strand, within AZOBR_RS10885at 2293.332 kb on - strand, within AZOBR_RS10885at 2293.373 kb on + strand, within AZOBR_RS10885at 2293.599 kb on + strandat 2293.599 kb on + strandat 2293.600 kb on - strandat 2293.600 kb on - strandat 2293.600 kb on - strandat 2293.897 kb on - strandat 2294.493 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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2,293,118 + -0.3
2,293,331 + AZOBR_RS10885 0.54 -1.3
2,293,332 - AZOBR_RS10885 0.54 +0.2
2,293,373 + AZOBR_RS10885 0.63 +0.2
2,293,599 + -0.3
2,293,599 + -0.8
2,293,600 - -0.2
2,293,600 - +0.6
2,293,600 - -0.9
2,293,897 - +0.7
2,294,493 + +0.3

Or see this region's nucleotide sequence