Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS10880 and AZOBR_RS10885 are separated by 59 nucleotides AZOBR_RS10885 and AZOBR_RS10890 are separated by 262 nucleotides AZOBR_RS10890 and AZOBR_RS10895 are separated by 137 nucleotides AZOBR_RS10895 and AZOBR_RS10900 are separated by 44 nucleotides AZOBR_RS10900 and AZOBR_RS10905 are separated by 145 nucleotides
AZOBR_RS10880: AZOBR_RS10880 - hypothetical protein, at 2,292,620 to 2,293,027
_RS10880
AZOBR_RS10885: AZOBR_RS10885 - hypothetical protein, at 2,293,087 to 2,293,542
_RS10885
AZOBR_RS10890: AZOBR_RS10890 - tRNA-Arg, at 2,293,805 to 2,293,881
_RS10890
AZOBR_RS10895: AZOBR_RS10895 - hypothetical protein, at 2,294,019 to 2,294,456
_RS10895
AZOBR_RS10900: AZOBR_RS10900 - tRNA-Met, at 2,294,501 to 2,294,576
_RS10900
AZOBR_RS10905: AZOBR_RS10905 - RNA polymerase sigma factor RpoD, at 2,294,722 to 2,296,683
_RS10905
Position (kb)
2293
2294 Strain fitness (log2 ratio)
-1
0
1 at 2293.118 kb on + strand at 2293.331 kb on + strand, within AZOBR_RS10885 at 2293.332 kb on - strand, within AZOBR_RS10885 at 2293.373 kb on + strand, within AZOBR_RS10885 at 2293.599 kb on + strand at 2293.599 kb on + strand at 2293.600 kb on - strand at 2293.600 kb on - strand at 2293.600 kb on - strand at 2293.897 kb on - strand at 2294.493 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 2,293,118 + -0.3 2,293,331 + AZOBR_RS10885 0.54 -1.3 2,293,332 - AZOBR_RS10885 0.54 +0.2 2,293,373 + AZOBR_RS10885 0.63 +0.2 2,293,599 + -0.3 2,293,599 + -0.8 2,293,600 - -0.2 2,293,600 - +0.6 2,293,600 - -0.9 2,293,897 - +0.7 2,294,493 + +0.3
Or see this region's nucleotide sequence