Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS07835

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS07830 and AZOBR_RS07835 overlap by 1 nucleotidesAZOBR_RS07835 and AZOBR_RS07840 are separated by 70 nucleotides AZOBR_RS07830: AZOBR_RS07830 - aminotransferase, at 1,650,046 to 1,651,320 _RS07830 AZOBR_RS07835: AZOBR_RS07835 - homoserine dehydrogenase, at 1,651,320 to 1,652,627 _RS07835 AZOBR_RS07840: AZOBR_RS07840 - fructose 1 6-bisphosphatase, at 1,652,698 to 1,653,663 _RS07840 Position (kb) 1651 1652 1653Strain fitness (log2 ratio) -1 0 1at 1650.868 kb on + strand, within AZOBR_RS07830at 1650.961 kb on + strand, within AZOBR_RS07830at 1652.636 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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1,650,868 + AZOBR_RS07830 0.64 -0.3
1,650,961 + AZOBR_RS07830 0.72 +0.2
1,652,636 + -0.5

Or see this region's nucleotide sequence