Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06010

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS06005 and AZOBR_RS06010 are separated by 259 nucleotidesAZOBR_RS06010 and AZOBR_RS06015 are separated by 20 nucleotidesAZOBR_RS06015 and AZOBR_RS06020 are separated by 74 nucleotidesAZOBR_RS06020 and AZOBR_RS06025 are separated by 148 nucleotides AZOBR_RS06005: AZOBR_RS06005 - hypothetical protein, at 1,278,822 to 1,279,202 _RS06005 AZOBR_RS06010: AZOBR_RS06010 - regulator, at 1,279,462 to 1,279,866 _RS06010 AZOBR_RS06015: AZOBR_RS06015 - hypothetical protein, at 1,279,887 to 1,280,237 _RS06015 AZOBR_RS06020: AZOBR_RS06020 - tRNA-Tyr, at 1,280,312 to 1,280,397 _RS06020 AZOBR_RS06025: AZOBR_RS06025 - hydrogenase, at 1,280,546 to 1,281,172 _RS06025 Position (kb) 1279 1280Strain fitness (log2 ratio) -1 0 1 2at 1278.591 kb on + strandat 1278.592 kb on - strandat 1278.596 kb on + strandat 1278.597 kb on - strandat 1278.597 kb on - strandat 1278.597 kb on - strandat 1278.719 kb on + strandat 1278.720 kb on - strandat 1278.759 kb on + strandat 1278.821 kb on + strandat 1278.821 kb on + strandat 1278.821 kb on + strandat 1278.822 kb on - strandat 1278.822 kb on - strandat 1278.822 kb on - strandat 1279.355 kb on + strandat 1279.356 kb on - strandat 1279.492 kb on + strandat 1279.492 kb on + strandat 1279.493 kb on - strandat 1279.493 kb on - strandat 1280.070 kb on + strand, within AZOBR_RS06015at 1280.106 kb on + strand, within AZOBR_RS06015at 1280.107 kb on - strand, within AZOBR_RS06015at 1280.116 kb on - strand, within AZOBR_RS06015at 1280.116 kb on - strand, within AZOBR_RS06015at 1280.116 kb on - strand, within AZOBR_RS06015at 1280.118 kb on + strand, within AZOBR_RS06015at 1280.119 kb on - strand, within AZOBR_RS06015at 1280.119 kb on - strand, within AZOBR_RS06015at 1280.342 kb on - strand, within AZOBR_RS06020at 1280.473 kb on + strandat 1280.473 kb on + strandat 1280.478 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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1,278,591 + -0.6
1,278,592 - +0.6
1,278,596 + -0.3
1,278,597 - -0.1
1,278,597 - -0.3
1,278,597 - -0.8
1,278,719 + +0.1
1,278,720 - +1.8
1,278,759 + +0.5
1,278,821 + -0.6
1,278,821 + -0.0
1,278,821 + +0.1
1,278,822 - +1.8
1,278,822 - +0.0
1,278,822 - -0.2
1,279,355 + -0.1
1,279,356 - -0.2
1,279,492 + +1.0
1,279,492 + +0.2
1,279,493 - -0.4
1,279,493 - +1.1
1,280,070 + AZOBR_RS06015 0.52 -1.2
1,280,106 + AZOBR_RS06015 0.62 -0.5
1,280,107 - AZOBR_RS06015 0.63 -0.3
1,280,116 - AZOBR_RS06015 0.65 +0.3
1,280,116 - AZOBR_RS06015 0.65 +0.4
1,280,116 - AZOBR_RS06015 0.65 +0.5
1,280,118 + AZOBR_RS06015 0.66 -0.1
1,280,119 - AZOBR_RS06015 0.66 +0.3
1,280,119 - AZOBR_RS06015 0.66 +0.2
1,280,342 - AZOBR_RS06020 0.35 -1.6
1,280,473 + -0.2
1,280,473 + +0.8
1,280,478 - +1.8

Or see this region's nucleotide sequence