Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS02880

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS02880 and AZOBR_RS02885 are separated by 49 nucleotidesAZOBR_RS02885 and AZOBR_RS02890 are separated by 379 nucleotides AZOBR_RS02880: AZOBR_RS02880 - cobalamin biosynthesis protein, at 613,683 to 614,648 _RS02880 AZOBR_RS02885: AZOBR_RS02885 - ankyrin, at 614,698 to 615,261 _RS02885 AZOBR_RS02890: AZOBR_RS02890 - hypothetical protein, at 615,641 to 616,201 _RS02890 Position (kb) 613 614 615Strain fitness (log2 ratio) -1 0 1at 612.777 kb on - strandat 612.779 kb on - strandat 612.837 kb on + strandat 612.887 kb on - strandat 612.888 kb on + strandat 613.039 kb on - strandat 613.242 kb on + strandat 613.243 kb on - strandat 613.562 kb on - strandat 613.562 kb on - strandat 613.750 kb on + strandat 614.873 kb on - strand, within AZOBR_RS02885at 614.958 kb on - strand, within AZOBR_RS02885at 615.312 kb on - strandat 615.314 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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612,777 - -0.1
612,779 - -0.2
612,837 + +0.3
612,887 - -0.4
612,888 + +0.3
613,039 - -0.3
613,242 + -0.5
613,243 - -0.5
613,562 - -0.7
613,562 - +0.0
613,750 + -0.3
614,873 - AZOBR_RS02885 0.31 -0.1
614,958 - AZOBR_RS02885 0.46 -0.1
615,312 - +0.3
615,314 + +0.3

Or see this region's nucleotide sequence