Experiment: McCas_H2_complete bromate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03530 and MMP_RS03535 are separated by 241 nucleotides MMP_RS03535 and MMP_RS03540 are separated by 10 nucleotides MMP_RS03540 and MMP_RS03545 are separated by 136 nucleotides
MMP_RS03530: MMP_RS03530 - tetratricopeptide repeat protein, at 661,342 to 662,571
_RS03530
MMP_RS03535: MMP_RS03535 - helix-turn-helix transcriptional regulator, at 662,813 to 663,016
_RS03535
MMP_RS03540: MMP_RS03540 - DUF2178 domain-containing protein, at 663,027 to 663,413
_RS03540
MMP_RS03545: MMP_RS03545 - ATP-binding protein, at 663,550 to 664,947
_RS03545
Position (kb) 662
663
664 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 661.842 kb on + strand, within MMP_RS03530 at 661.876 kb on + strand, within MMP_RS03530 at 661.877 kb on - strand, within MMP_RS03530 at 661.877 kb on - strand, within MMP_RS03530 at 661.877 kb on - strand, within MMP_RS03530 at 661.879 kb on - strand, within MMP_RS03530 at 661.879 kb on - strand, within MMP_RS03530 at 661.880 kb on + strand, within MMP_RS03530 at 661.880 kb on + strand, within MMP_RS03530 at 661.890 kb on + strand, within MMP_RS03530 at 661.892 kb on - strand, within MMP_RS03530 at 661.941 kb on - strand, within MMP_RS03530 at 661.942 kb on + strand, within MMP_RS03530 at 661.942 kb on + strand, within MMP_RS03530 at 661.944 kb on + strand, within MMP_RS03530 at 662.012 kb on + strand, within MMP_RS03530 at 662.064 kb on + strand, within MMP_RS03530 at 662.170 kb on - strand, within MMP_RS03530 at 662.420 kb on + strand, within MMP_RS03530 at 662.420 kb on + strand, within MMP_RS03530 at 662.468 kb on - strand at 662.496 kb on - strand at 662.497 kb on + strand at 662.499 kb on - strand at 662.527 kb on - strand at 662.558 kb on + strand at 662.573 kb on - strand at 662.592 kb on + strand at 662.600 kb on + strand at 662.629 kb on - strand at 662.802 kb on - strand at 662.803 kb on + strand at 662.824 kb on - strand at 662.833 kb on + strand at 662.840 kb on - strand, within MMP_RS03535 at 662.841 kb on + strand, within MMP_RS03535 at 662.841 kb on + strand, within MMP_RS03535 at 663.020 kb on - strand at 663.029 kb on + strand at 663.050 kb on - strand at 663.059 kb on + strand at 663.059 kb on + strand at 663.059 kb on + strand at 663.062 kb on - strand at 663.125 kb on - strand, within MMP_RS03540 at 663.272 kb on - strand, within MMP_RS03540 at 663.300 kb on - strand, within MMP_RS03540 at 663.302 kb on - strand, within MMP_RS03540 at 663.303 kb on + strand, within MMP_RS03540 at 663.306 kb on - strand, within MMP_RS03540 at 663.309 kb on - strand, within MMP_RS03540 at 663.310 kb on + strand, within MMP_RS03540 at 663.323 kb on + strand, within MMP_RS03540 at 663.370 kb on + strand, within MMP_RS03540 at 663.523 kb on - strand at 663.573 kb on - strand at 663.573 kb on - strand at 663.573 kb on - strand at 663.573 kb on - strand at 663.576 kb on + strand at 663.906 kb on - strand, within MMP_RS03545 at 663.994 kb on + strand, within MMP_RS03545
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete bromate 50 mM remove 661,842 + MMP_RS03530 0.41 +0.5 661,876 + MMP_RS03530 0.43 +1.0 661,877 - MMP_RS03530 0.43 -1.8 661,877 - MMP_RS03530 0.43 -0.8 661,877 - MMP_RS03530 0.43 +0.5 661,879 - MMP_RS03530 0.44 -0.1 661,879 - MMP_RS03530 0.44 -0.6 661,880 + MMP_RS03530 0.44 -2.1 661,880 + MMP_RS03530 0.44 +0.8 661,890 + MMP_RS03530 0.45 +1.1 661,892 - MMP_RS03530 0.45 -0.4 661,941 - MMP_RS03530 0.49 -0.7 661,942 + MMP_RS03530 0.49 +0.9 661,942 + MMP_RS03530 0.49 +0.7 661,944 + MMP_RS03530 0.49 -1.3 662,012 + MMP_RS03530 0.54 -0.3 662,064 + MMP_RS03530 0.59 +0.9 662,170 - MMP_RS03530 0.67 +0.6 662,420 + MMP_RS03530 0.88 +0.3 662,420 + MMP_RS03530 0.88 -0.2 662,468 - +0.5 662,496 - +0.0 662,497 + -0.9 662,499 - -0.2 662,527 - +0.6 662,558 + -0.1 662,573 - +0.1 662,592 + -1.2 662,600 + -1.8 662,629 - +1.2 662,802 - -1.6 662,803 + -0.1 662,824 - -0.2 662,833 + -1.6 662,840 - MMP_RS03535 0.13 -2.0 662,841 + MMP_RS03535 0.14 -2.6 662,841 + MMP_RS03535 0.14 +1.1 663,020 - -0.2 663,029 + +0.6 663,050 - -0.6 663,059 + -0.2 663,059 + +1.3 663,059 + -0.5 663,062 - +0.7 663,125 - MMP_RS03540 0.25 -0.4 663,272 - MMP_RS03540 0.63 +0.9 663,300 - MMP_RS03540 0.71 -0.9 663,302 - MMP_RS03540 0.71 -1.5 663,303 + MMP_RS03540 0.71 +1.0 663,306 - MMP_RS03540 0.72 +1.0 663,309 - MMP_RS03540 0.73 +3.1 663,310 + MMP_RS03540 0.73 +0.5 663,323 + MMP_RS03540 0.76 -0.1 663,370 + MMP_RS03540 0.89 +0.2 663,523 - -1.3 663,573 - -0.6 663,573 - +0.3 663,573 - +0.7 663,573 - +1.0 663,576 + +0.3 663,906 - MMP_RS03545 0.25 -0.1 663,994 + MMP_RS03545 0.32 +0.6
Or see this region's nucleotide sequence