Experiment: McCas_H2_complete no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04100 and MMP_RS04105 are separated by 49 nucleotides MMP_RS04105 and MMP_RS04110 are separated by 243 nucleotides MMP_RS04110 and MMP_RS04115 are separated by 615 nucleotides
MMP_RS04100: MMP_RS04100 - hypothetical protein, at 777,809 to 777,994
_RS04100
MMP_RS04105: MMP_RS04105 - MarR family transcriptional regulator, at 778,044 to 778,538
_RS04105
MMP_RS04110: MMP_RS04110 - methyl-accepting chemotaxis protein, at 778,782 to 780,980
_RS04110
MMP_RS04115: MMP_RS04115 - cytosine permease, at 781,596 to 782,831
_RS04115
Position (kb) 778
779
780
781 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 777.791 kb on - strand at 777.875 kb on - strand, within MMP_RS04100 at 777.876 kb on + strand, within MMP_RS04100 at 777.964 kb on + strand, within MMP_RS04100 at 777.986 kb on + strand at 778.032 kb on + strand at 778.070 kb on - strand at 778.104 kb on - strand, within MMP_RS04105 at 778.201 kb on - strand, within MMP_RS04105 at 778.207 kb on - strand, within MMP_RS04105 at 778.208 kb on + strand, within MMP_RS04105 at 778.232 kb on - strand, within MMP_RS04105 at 778.263 kb on - strand, within MMP_RS04105 at 778.331 kb on - strand, within MMP_RS04105 at 778.352 kb on - strand, within MMP_RS04105 at 778.353 kb on + strand, within MMP_RS04105 at 778.417 kb on - strand, within MMP_RS04105 at 778.418 kb on + strand, within MMP_RS04105 at 778.437 kb on + strand, within MMP_RS04105 at 778.495 kb on - strand at 778.499 kb on - strand at 778.499 kb on - strand at 778.499 kb on - strand at 778.500 kb on + strand at 778.500 kb on + strand at 778.500 kb on + strand at 778.538 kb on - strand at 778.542 kb on - strand at 778.542 kb on - strand at 778.543 kb on + strand at 778.556 kb on - strand at 778.595 kb on - strand at 778.595 kb on - strand at 778.632 kb on - strand at 778.635 kb on - strand at 778.636 kb on + strand at 778.641 kb on - strand at 778.641 kb on - strand at 778.644 kb on - strand at 778.669 kb on - strand at 778.690 kb on - strand at 778.855 kb on - strand at 778.935 kb on + strand at 779.018 kb on - strand, within MMP_RS04110 at 779.058 kb on + strand, within MMP_RS04110 at 779.198 kb on - strand, within MMP_RS04110 at 779.341 kb on - strand, within MMP_RS04110 at 779.374 kb on - strand, within MMP_RS04110 at 779.502 kb on - strand, within MMP_RS04110 at 779.502 kb on - strand, within MMP_RS04110 at 779.502 kb on - strand, within MMP_RS04110 at 779.506 kb on - strand, within MMP_RS04110 at 779.507 kb on + strand, within MMP_RS04110 at 779.507 kb on + strand, within MMP_RS04110 at 779.526 kb on - strand, within MMP_RS04110 at 779.526 kb on - strand, within MMP_RS04110 at 779.526 kb on - strand, within MMP_RS04110 at 779.527 kb on + strand, within MMP_RS04110 at 779.561 kb on - strand, within MMP_RS04110 at 779.561 kb on - strand, within MMP_RS04110 at 779.572 kb on + strand, within MMP_RS04110 at 779.582 kb on + strand, within MMP_RS04110 at 779.602 kb on - strand, within MMP_RS04110 at 779.603 kb on + strand, within MMP_RS04110 at 779.603 kb on + strand, within MMP_RS04110 at 779.615 kb on + strand, within MMP_RS04110 at 779.677 kb on - strand, within MMP_RS04110 at 779.690 kb on + strand, within MMP_RS04110 at 779.697 kb on + strand, within MMP_RS04110 at 779.717 kb on - strand, within MMP_RS04110 at 779.718 kb on + strand, within MMP_RS04110 at 779.761 kb on - strand, within MMP_RS04110 at 779.833 kb on - strand, within MMP_RS04110 at 780.009 kb on + strand, within MMP_RS04110 at 780.086 kb on + strand, within MMP_RS04110 at 780.089 kb on - strand, within MMP_RS04110 at 780.258 kb on - strand, within MMP_RS04110 at 780.259 kb on + strand, within MMP_RS04110 at 780.592 kb on - strand, within MMP_RS04110 at 780.592 kb on - strand, within MMP_RS04110 at 780.592 kb on - strand, within MMP_RS04110 at 780.593 kb on + strand, within MMP_RS04110 at 780.593 kb on + strand, within MMP_RS04110 at 780.618 kb on + strand, within MMP_RS04110 at 780.637 kb on - strand, within MMP_RS04110 at 780.698 kb on + strand, within MMP_RS04110 at 780.731 kb on + strand, within MMP_RS04110 at 780.865 kb on - strand at 780.887 kb on + strand at 781.001 kb on - strand at 781.002 kb on + strand at 781.017 kb on - strand at 781.019 kb on - strand at 781.020 kb on + strand at 781.031 kb on - strand at 781.031 kb on - strand at 781.031 kb on - strand at 781.032 kb on + strand at 781.034 kb on - strand at 781.034 kb on - strand at 781.048 kb on - strand at 781.049 kb on + strand at 781.049 kb on + strand at 781.050 kb on - strand at 781.050 kb on - strand at 781.050 kb on - strand at 781.051 kb on + strand at 781.051 kb on + strand at 781.056 kb on - strand at 781.057 kb on + strand at 781.057 kb on + strand at 781.058 kb on - strand at 781.058 kb on - strand at 781.058 kb on - strand at 781.059 kb on + strand at 781.059 kb on + strand at 781.061 kb on + strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.089 kb on + strand at 781.089 kb on + strand at 781.097 kb on - strand at 781.097 kb on - strand at 781.098 kb on + strand at 781.099 kb on - strand at 781.099 kb on - strand at 781.099 kb on - strand at 781.099 kb on - strand at 781.099 kb on - strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.111 kb on + strand at 781.111 kb on + strand at 781.131 kb on - strand at 781.132 kb on + strand at 781.134 kb on + strand at 781.134 kb on + strand at 781.134 kb on + strand at 781.155 kb on + strand at 781.168 kb on - strand at 781.168 kb on - strand at 781.173 kb on + strand at 781.190 kb on - strand at 781.190 kb on - strand at 781.196 kb on - strand at 781.196 kb on - strand at 781.196 kb on - strand at 781.197 kb on + strand at 781.239 kb on + strand at 781.267 kb on - strand at 781.267 kb on - strand at 781.315 kb on - strand at 781.332 kb on + strand at 781.336 kb on + strand at 781.337 kb on - strand at 781.432 kb on + strand at 781.482 kb on - strand at 781.505 kb on - strand at 781.515 kb on - strand at 781.523 kb on + strand at 781.578 kb on + strand at 781.586 kb on + strand at 781.589 kb on + strand at 781.590 kb on - strand at 781.597 kb on - strand at 781.626 kb on - strand at 781.633 kb on - strand at 781.634 kb on + strand at 781.638 kb on + strand at 781.638 kb on + strand at 781.662 kb on - strand at 781.749 kb on + strand, within MMP_RS04115 at 781.768 kb on - strand, within MMP_RS04115 at 781.802 kb on - strand, within MMP_RS04115 at 781.802 kb on - strand, within MMP_RS04115 at 781.835 kb on - strand, within MMP_RS04115 at 781.835 kb on - strand, within MMP_RS04115 at 781.854 kb on - strand, within MMP_RS04115 at 781.855 kb on + strand, within MMP_RS04115 at 781.862 kb on - strand, within MMP_RS04115 at 781.868 kb on + strand, within MMP_RS04115 at 781.938 kb on + strand, within MMP_RS04115
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete no stress control remove 777,791 - -1.3 777,875 - MMP_RS04100 0.35 +0.3 777,876 + MMP_RS04100 0.36 +1.1 777,964 + MMP_RS04100 0.83 +0.5 777,986 + -0.4 778,032 + -1.2 778,070 - -0.0 778,104 - MMP_RS04105 0.12 -1.0 778,201 - MMP_RS04105 0.32 -0.9 778,207 - MMP_RS04105 0.33 -0.9 778,208 + MMP_RS04105 0.33 +0.7 778,232 - MMP_RS04105 0.38 -0.0 778,263 - MMP_RS04105 0.44 +0.6 778,331 - MMP_RS04105 0.58 +0.8 778,352 - MMP_RS04105 0.62 +1.0 778,353 + MMP_RS04105 0.62 +0.2 778,417 - MMP_RS04105 0.75 +0.0 778,418 + MMP_RS04105 0.76 +0.7 778,437 + MMP_RS04105 0.79 +0.4 778,495 - +1.0 778,499 - -0.1 778,499 - +1.3 778,499 - +0.1 778,500 + +1.5 778,500 + -0.7 778,500 + -0.8 778,538 - +0.7 778,542 - -0.0 778,542 - -2.2 778,543 + -1.9 778,556 - -0.7 778,595 - -0.3 778,595 - +2.0 778,632 - +0.3 778,635 - -1.3 778,636 + -0.5 778,641 - -0.9 778,641 - -0.2 778,644 - +1.3 778,669 - +1.2 778,690 - +1.9 778,855 - +1.6 778,935 + -0.8 779,018 - MMP_RS04110 0.11 -0.3 779,058 + MMP_RS04110 0.13 +0.4 779,198 - MMP_RS04110 0.19 -0.6 779,341 - MMP_RS04110 0.25 +0.5 779,374 - MMP_RS04110 0.27 -2.9 779,502 - MMP_RS04110 0.33 -0.9 779,502 - MMP_RS04110 0.33 -3.0 779,502 - MMP_RS04110 0.33 +0.7 779,506 - MMP_RS04110 0.33 -0.2 779,507 + MMP_RS04110 0.33 +0.8 779,507 + MMP_RS04110 0.33 +0.2 779,526 - MMP_RS04110 0.34 +0.6 779,526 - MMP_RS04110 0.34 +0.2 779,526 - MMP_RS04110 0.34 +0.1 779,527 + MMP_RS04110 0.34 +1.7 779,561 - MMP_RS04110 0.35 +0.1 779,561 - MMP_RS04110 0.35 +1.3 779,572 + MMP_RS04110 0.36 -4.2 779,582 + MMP_RS04110 0.36 -1.7 779,602 - MMP_RS04110 0.37 -0.5 779,603 + MMP_RS04110 0.37 -3.3 779,603 + MMP_RS04110 0.37 +0.1 779,615 + MMP_RS04110 0.38 -0.1 779,677 - MMP_RS04110 0.41 -2.1 779,690 + MMP_RS04110 0.41 +0.9 779,697 + MMP_RS04110 0.42 -1.4 779,717 - MMP_RS04110 0.43 -0.9 779,718 + MMP_RS04110 0.43 -0.7 779,761 - MMP_RS04110 0.45 +0.4 779,833 - MMP_RS04110 0.48 +0.6 780,009 + MMP_RS04110 0.56 +0.7 780,086 + MMP_RS04110 0.59 -0.1 780,089 - MMP_RS04110 0.59 -1.8 780,258 - MMP_RS04110 0.67 -1.7 780,259 + MMP_RS04110 0.67 +0.2 780,592 - MMP_RS04110 0.82 +1.1 780,592 - MMP_RS04110 0.82 +0.0 780,592 - MMP_RS04110 0.82 +0.6 780,593 + MMP_RS04110 0.82 +0.6 780,593 + MMP_RS04110 0.82 +0.2 780,618 + MMP_RS04110 0.83 -0.1 780,637 - MMP_RS04110 0.84 +0.7 780,698 + MMP_RS04110 0.87 -0.4 780,731 + MMP_RS04110 0.89 -0.7 780,865 - +0.3 780,887 + -1.4 781,001 - +1.9 781,002 + +0.2 781,017 - +1.5 781,019 - +0.1 781,020 + -0.6 781,031 - +1.3 781,031 - -0.0 781,031 - -0.2 781,032 + +0.1 781,034 - +1.0 781,034 - -2.6 781,048 - +0.4 781,049 + +0.4 781,049 + -0.9 781,050 - -0.4 781,050 - +1.2 781,050 - +0.2 781,051 + -2.6 781,051 + +1.7 781,056 - +0.8 781,057 + -0.2 781,057 + +0.7 781,058 - -0.0 781,058 - +1.3 781,058 - +0.0 781,059 + +1.0 781,059 + -0.4 781,061 + +0.3 781,088 - +1.4 781,088 - -1.0 781,088 - -0.0 781,088 - -0.0 781,088 - +0.2 781,088 - -0.4 781,089 + +1.6 781,089 + -1.1 781,097 - -1.5 781,097 - -1.2 781,098 + +1.3 781,099 - +0.3 781,099 - +0.5 781,099 - +2.6 781,099 - -0.3 781,099 - +2.5 781,100 + +0.7 781,100 + +0.1 781,100 + -1.2 781,100 + -0.3 781,100 + +0.5 781,100 + -1.5 781,111 + -0.4 781,111 + -1.0 781,131 - -0.4 781,132 + +1.5 781,134 + -0.2 781,134 + -0.4 781,134 + +0.6 781,155 + -2.1 781,168 - +0.8 781,168 - +0.4 781,173 + -1.1 781,190 - +0.0 781,190 - +1.2 781,196 - +0.0 781,196 - -0.5 781,196 - -0.1 781,197 + -0.0 781,239 + +0.7 781,267 - -0.7 781,267 - -2.6 781,315 - +0.8 781,332 + -0.9 781,336 + -0.5 781,337 - -0.3 781,432 + +0.2 781,482 - +2.5 781,505 - +0.5 781,515 - +0.4 781,523 + -1.6 781,578 + -0.9 781,586 + +0.4 781,589 + -0.4 781,590 - -0.3 781,597 - -0.1 781,626 - +0.2 781,633 - +0.2 781,634 + -0.1 781,638 + +0.6 781,638 + -0.8 781,662 - -2.0 781,749 + MMP_RS04115 0.12 +1.3 781,768 - MMP_RS04115 0.14 -1.0 781,802 - MMP_RS04115 0.17 +0.2 781,802 - MMP_RS04115 0.17 -0.1 781,835 - MMP_RS04115 0.19 -0.1 781,835 - MMP_RS04115 0.19 +1.1 781,854 - MMP_RS04115 0.21 -0.4 781,855 + MMP_RS04115 0.21 -0.1 781,862 - MMP_RS04115 0.22 +1.0 781,868 + MMP_RS04115 0.22 +0.9 781,938 + MMP_RS04115 0.28 +1.0
Or see this region's nucleotide sequence