Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01135

Experiment: McCas_H2_complete 3-nitroxypropanol 0.00833333333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01130 and MMP_RS01135 are separated by 526 nucleotidesMMP_RS01135 and MMP_RS01140 are separated by 9 nucleotidesMMP_RS01140 and MMP_RS01145 are separated by 9 nucleotides MMP_RS01130: MMP_RS01130 - flavoprotein, at 211,471 to 212,001 _RS01130 MMP_RS01135: MMP_RS01135 - molybdate ABC transporter substrate-binding protein, at 212,528 to 213,331 _RS01135 MMP_RS01140: MMP_RS01140 - molybdate ABC transporter permease subunit, at 213,341 to 214,006 _RS01140 MMP_RS01145: MMP_RS01145 - ABC transporter ATP-binding protein, at 214,016 to 215,158 _RS01145 Position (kb) 212 213 214Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 211.678 kb on - strand, within MMP_RS01130at 211.678 kb on - strand, within MMP_RS01130at 211.746 kb on - strand, within MMP_RS01130at 211.747 kb on + strand, within MMP_RS01130at 211.770 kb on - strand, within MMP_RS01130at 211.773 kb on + strand, within MMP_RS01130at 211.806 kb on - strand, within MMP_RS01130at 211.807 kb on + strand, within MMP_RS01130at 211.880 kb on - strand, within MMP_RS01130at 212.008 kb on - strandat 212.008 kb on - strandat 212.009 kb on + strandat 212.012 kb on - strandat 212.013 kb on + strandat 212.017 kb on + strandat 212.018 kb on - strandat 212.129 kb on - strandat 212.129 kb on - strandat 212.129 kb on - strandat 212.177 kb on - strandat 212.281 kb on - strandat 212.286 kb on - strandat 212.454 kb on - strandat 212.454 kb on - strandat 212.454 kb on - strandat 212.457 kb on + strandat 212.457 kb on + strandat 212.512 kb on + strandat 212.512 kb on + strandat 212.512 kb on + strandat 212.514 kb on + strandat 212.551 kb on + strandat 212.812 kb on - strand, within MMP_RS01135at 212.823 kb on - strand, within MMP_RS01135at 212.830 kb on + strand, within MMP_RS01135at 212.830 kb on + strand, within MMP_RS01135at 212.830 kb on + strand, within MMP_RS01135at 212.926 kb on - strand, within MMP_RS01135at 212.927 kb on + strand, within MMP_RS01135at 212.927 kb on + strand, within MMP_RS01135at 212.944 kb on + strand, within MMP_RS01135at 212.977 kb on - strand, within MMP_RS01135at 213.129 kb on - strand, within MMP_RS01135at 213.132 kb on + strand, within MMP_RS01135at 213.132 kb on + strand, within MMP_RS01135at 213.132 kb on + strand, within MMP_RS01135at 213.175 kb on - strand, within MMP_RS01135at 213.176 kb on + strand, within MMP_RS01135at 213.176 kb on + strand, within MMP_RS01135at 213.177 kb on - strand, within MMP_RS01135at 213.177 kb on - strand, within MMP_RS01135at 213.178 kb on + strand, within MMP_RS01135at 213.206 kb on + strand, within MMP_RS01135at 213.206 kb on + strand, within MMP_RS01135at 213.217 kb on + strand, within MMP_RS01135at 213.217 kb on + strand, within MMP_RS01135at 213.220 kb on - strand, within MMP_RS01135at 213.220 kb on - strand, within MMP_RS01135at 213.269 kb on - strandat 213.270 kb on + strandat 213.336 kb on + strandat 213.354 kb on - strandat 213.355 kb on + strandat 213.355 kb on + strandat 213.366 kb on - strandat 213.370 kb on - strandat 213.370 kb on - strandat 213.370 kb on - strandat 213.370 kb on - strandat 213.370 kb on - strandat 213.388 kb on - strandat 213.390 kb on - strandat 213.395 kb on + strandat 213.395 kb on + strandat 213.395 kb on + strandat 213.480 kb on - strand, within MMP_RS01140at 213.480 kb on - strand, within MMP_RS01140at 213.597 kb on - strand, within MMP_RS01140at 213.934 kb on + strand, within MMP_RS01140at 213.949 kb on + strandat 214.004 kb on - strandat 214.016 kb on + strandat 214.114 kb on + strandat 214.262 kb on + strand, within MMP_RS01145at 214.305 kb on + strand, within MMP_RS01145

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete 3-nitroxypropanol 0.00833333333333333 mM
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211,678 - MMP_RS01130 0.39 -0.1
211,678 - MMP_RS01130 0.39 +1.2
211,746 - MMP_RS01130 0.52 +0.8
211,747 + MMP_RS01130 0.52 +0.1
211,770 - MMP_RS01130 0.56 +1.0
211,773 + MMP_RS01130 0.57 +1.6
211,806 - MMP_RS01130 0.63 +2.8
211,807 + MMP_RS01130 0.63 -1.4
211,880 - MMP_RS01130 0.77 +0.3
212,008 - +0.4
212,008 - -0.1
212,009 + -0.8
212,012 - -0.5
212,013 + +1.3
212,017 + +0.6
212,018 - +0.0
212,129 - +0.4
212,129 - +1.2
212,129 - -0.5
212,177 - -1.4
212,281 - +0.7
212,286 - -0.3
212,454 - -1.6
212,454 - -1.3
212,454 - -0.2
212,457 + +0.7
212,457 + -0.4
212,512 + -1.1
212,512 + -0.2
212,512 + -1.9
212,514 + +1.0
212,551 + -0.7
212,812 - MMP_RS01135 0.35 +0.8
212,823 - MMP_RS01135 0.37 +2.5
212,830 + MMP_RS01135 0.38 +0.1
212,830 + MMP_RS01135 0.38 +5.5
212,830 + MMP_RS01135 0.38 +1.4
212,926 - MMP_RS01135 0.50 -1.0
212,927 + MMP_RS01135 0.50 +0.3
212,927 + MMP_RS01135 0.50 +0.3
212,944 + MMP_RS01135 0.52 +1.6
212,977 - MMP_RS01135 0.56 +1.7
213,129 - MMP_RS01135 0.75 +0.9
213,132 + MMP_RS01135 0.75 -0.5
213,132 + MMP_RS01135 0.75 +0.3
213,132 + MMP_RS01135 0.75 +1.0
213,175 - MMP_RS01135 0.80 -0.7
213,176 + MMP_RS01135 0.81 +1.0
213,176 + MMP_RS01135 0.81 -1.0
213,177 - MMP_RS01135 0.81 -0.5
213,177 - MMP_RS01135 0.81 -0.1
213,178 + MMP_RS01135 0.81 +0.1
213,206 + MMP_RS01135 0.84 +1.4
213,206 + MMP_RS01135 0.84 -0.5
213,217 + MMP_RS01135 0.86 +1.1
213,217 + MMP_RS01135 0.86 +0.9
213,220 - MMP_RS01135 0.86 +0.5
213,220 - MMP_RS01135 0.86 +0.3
213,269 - -0.5
213,270 + +0.2
213,336 + +0.4
213,354 - +0.3
213,355 + -0.6
213,355 + -0.7
213,366 - +0.5
213,370 - +2.1
213,370 - +0.5
213,370 - +0.0
213,370 - -1.0
213,370 - +1.1
213,388 - -0.7
213,390 - +0.4
213,395 + -0.3
213,395 + -1.6
213,395 + -0.6
213,480 - MMP_RS01140 0.21 -1.7
213,480 - MMP_RS01140 0.21 -0.9
213,597 - MMP_RS01140 0.38 -1.3
213,934 + MMP_RS01140 0.89 +0.2
213,949 + -0.8
214,004 - +0.9
214,016 + +0.3
214,114 + -0.9
214,262 + MMP_RS01145 0.22 +1.5
214,305 + MMP_RS01145 0.25 -1.7

Or see this region's nucleotide sequence