Experiment: McCas_H2_complete 3-nitroxypropanol 0.00833333333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00925 and MMP_RS00930 are separated by 90 nucleotides MMP_RS00930 and MMP_RS00935 are separated by 9 nucleotides MMP_RS00935 and MMP_RS00940 are separated by 0 nucleotides MMP_RS00940 and MMP_RS00945 are separated by 1 nucleotides
MMP_RS00925: MMP_RS00925 - sirohydrochlorin nickelochelatase, at 173,152 to 173,586
_RS00925
MMP_RS00930: MMP_RS00930 - ABC transporter permease, at 173,677 to 174,438
_RS00930
MMP_RS00935: MMP_RS00935 - MATE family efflux transporter, at 174,448 to 175,830
_RS00935
MMP_RS00940: MMP_RS00940 - daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein, at 175,831 to 176,799
_RS00940
MMP_RS00945: MMP_RS00945 - PadR family transcriptional regulator, at 176,801 to 177,259
_RS00945
Position (kb) 174
175
176 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 173.449 kb on + strand at 173.652 kb on + strand at 173.652 kb on + strand at 173.656 kb on + strand at 173.705 kb on - strand at 173.713 kb on - strand at 173.788 kb on - strand, within MMP_RS00930 at 173.816 kb on - strand, within MMP_RS00930 at 173.816 kb on - strand, within MMP_RS00930 at 173.817 kb on + strand, within MMP_RS00930 at 173.817 kb on + strand, within MMP_RS00930 at 173.832 kb on - strand, within MMP_RS00930 at 173.834 kb on - strand, within MMP_RS00930 at 173.911 kb on - strand, within MMP_RS00930 at 174.257 kb on - strand, within MMP_RS00930 at 174.450 kb on + strand at 174.486 kb on - strand at 174.504 kb on + strand at 174.504 kb on + strand at 174.526 kb on + strand at 174.589 kb on - strand, within MMP_RS00935 at 174.603 kb on - strand, within MMP_RS00935 at 174.769 kb on + strand, within MMP_RS00935 at 174.797 kb on + strand, within MMP_RS00935 at 174.804 kb on - strand, within MMP_RS00935 at 174.931 kb on - strand, within MMP_RS00935 at 175.267 kb on - strand, within MMP_RS00935 at 175.270 kb on - strand, within MMP_RS00935 at 175.270 kb on - strand, within MMP_RS00935 at 175.274 kb on - strand, within MMP_RS00935 at 175.324 kb on + strand, within MMP_RS00935 at 175.328 kb on - strand, within MMP_RS00935 at 175.328 kb on - strand, within MMP_RS00935 at 175.328 kb on - strand, within MMP_RS00935 at 175.329 kb on + strand, within MMP_RS00935 at 175.329 kb on + strand, within MMP_RS00935 at 175.341 kb on - strand, within MMP_RS00935 at 175.341 kb on - strand, within MMP_RS00935 at 175.341 kb on - strand, within MMP_RS00935 at 175.342 kb on + strand, within MMP_RS00935 at 175.390 kb on - strand, within MMP_RS00935 at 175.391 kb on + strand, within MMP_RS00935 at 175.394 kb on + strand, within MMP_RS00935 at 175.531 kb on - strand, within MMP_RS00935 at 175.552 kb on + strand, within MMP_RS00935 at 175.552 kb on + strand, within MMP_RS00935 at 175.774 kb on - strand at 176.026 kb on + strand, within MMP_RS00940 at 176.028 kb on + strand, within MMP_RS00940 at 176.052 kb on - strand, within MMP_RS00940 at 176.220 kb on + strand, within MMP_RS00940 at 176.292 kb on - strand, within MMP_RS00940 at 176.412 kb on - strand, within MMP_RS00940 at 176.429 kb on + strand, within MMP_RS00940 at 176.435 kb on + strand, within MMP_RS00940 at 176.460 kb on - strand, within MMP_RS00940 at 176.652 kb on - strand, within MMP_RS00940 at 176.656 kb on - strand, within MMP_RS00940 at 176.656 kb on - strand, within MMP_RS00940 at 176.657 kb on + strand, within MMP_RS00940 at 176.743 kb on - strand at 176.749 kb on - strand at 176.750 kb on + strand at 176.757 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete 3-nitroxypropanol 0.00833333333333333 mM remove 173,449 + -4.4 173,652 + -2.7 173,652 + -2.1 173,656 + -1.7 173,705 - -0.2 173,713 - +0.4 173,788 - MMP_RS00930 0.15 +0.5 173,816 - MMP_RS00930 0.18 +1.0 173,816 - MMP_RS00930 0.18 -0.4 173,817 + MMP_RS00930 0.18 +0.2 173,817 + MMP_RS00930 0.18 +4.5 173,832 - MMP_RS00930 0.20 -1.0 173,834 - MMP_RS00930 0.21 -1.2 173,911 - MMP_RS00930 0.31 +0.1 174,257 - MMP_RS00930 0.76 +1.5 174,450 + +0.6 174,486 - -0.2 174,504 + -0.8 174,504 + +0.4 174,526 + +0.5 174,589 - MMP_RS00935 0.10 +0.2 174,603 - MMP_RS00935 0.11 -0.4 174,769 + MMP_RS00935 0.23 +0.9 174,797 + MMP_RS00935 0.25 -0.7 174,804 - MMP_RS00935 0.26 +5.1 174,931 - MMP_RS00935 0.35 +0.9 175,267 - MMP_RS00935 0.59 -2.8 175,270 - MMP_RS00935 0.59 +0.8 175,270 - MMP_RS00935 0.59 +0.9 175,274 - MMP_RS00935 0.60 -0.0 175,324 + MMP_RS00935 0.63 -1.3 175,328 - MMP_RS00935 0.64 -0.1 175,328 - MMP_RS00935 0.64 +1.3 175,328 - MMP_RS00935 0.64 -3.0 175,329 + MMP_RS00935 0.64 +0.0 175,329 + MMP_RS00935 0.64 +1.5 175,341 - MMP_RS00935 0.65 +1.3 175,341 - MMP_RS00935 0.65 +0.7 175,341 - MMP_RS00935 0.65 -0.8 175,342 + MMP_RS00935 0.65 +2.3 175,390 - MMP_RS00935 0.68 -2.2 175,391 + MMP_RS00935 0.68 +1.4 175,394 + MMP_RS00935 0.68 +0.1 175,531 - MMP_RS00935 0.78 +1.5 175,552 + MMP_RS00935 0.80 -0.2 175,552 + MMP_RS00935 0.80 +0.5 175,774 - -0.2 176,026 + MMP_RS00940 0.20 +0.3 176,028 + MMP_RS00940 0.20 +0.0 176,052 - MMP_RS00940 0.23 +0.1 176,220 + MMP_RS00940 0.40 +0.3 176,292 - MMP_RS00940 0.48 -0.2 176,412 - MMP_RS00940 0.60 +0.8 176,429 + MMP_RS00940 0.62 +0.9 176,435 + MMP_RS00940 0.62 -0.3 176,460 - MMP_RS00940 0.65 +1.0 176,652 - MMP_RS00940 0.85 -0.9 176,656 - MMP_RS00940 0.85 -0.4 176,656 - MMP_RS00940 0.85 -0.8 176,657 + MMP_RS00940 0.85 +1.8 176,743 - -0.3 176,749 - -0.9 176,750 + +0.4 176,757 - -0.1
Or see this region's nucleotide sequence