Experiment: McCas_H2_complete sulfate 125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS05125 and MMP_RS05130 are separated by 379 nucleotides MMP_RS05130 and MMP_RS09015 are separated by 57 nucleotides MMP_RS09015 and MMP_RS05135 are separated by 28 nucleotides MMP_RS05135 and MMP_RS05140 are separated by 118 nucleotides
MMP_RS05125: MMP_RS05125 - D-aminoacyl-tRNA deacylase, at 977,591 to 978,355
_RS05125
MMP_RS05130: MMP_RS05130 - DUF2226 domain-containing protein, at 978,735 to 980,321
_RS05130
MMP_RS09015: MMP_RS09015 - hypothetical protein, at 980,379 to 980,537
_RS09015
MMP_RS05135: MMP_RS05135 - hypothetical protein, at 980,566 to 981,087
_RS05135
MMP_RS05140: MMP_RS05140 - helix-turn-helix transcriptional regulator, at 981,206 to 981,406
_RS05140
Position (kb) 978
979
980
981 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4 at 977.735 kb on - strand, within MMP_RS05125 at 977.736 kb on + strand, within MMP_RS05125 at 977.736 kb on + strand, within MMP_RS05125 at 977.736 kb on + strand, within MMP_RS05125 at 977.736 kb on + strand, within MMP_RS05125 at 977.737 kb on - strand, within MMP_RS05125 at 977.739 kb on - strand, within MMP_RS05125 at 977.740 kb on + strand, within MMP_RS05125 at 977.740 kb on + strand, within MMP_RS05125 at 977.787 kb on - strand, within MMP_RS05125 at 977.788 kb on + strand, within MMP_RS05125 at 977.791 kb on - strand, within MMP_RS05125 at 977.791 kb on - strand, within MMP_RS05125 at 977.791 kb on - strand, within MMP_RS05125 at 977.792 kb on + strand, within MMP_RS05125 at 977.952 kb on - strand, within MMP_RS05125 at 978.072 kb on - strand, within MMP_RS05125 at 978.137 kb on - strand, within MMP_RS05125 at 978.193 kb on + strand, within MMP_RS05125 at 978.214 kb on + strand, within MMP_RS05125 at 978.224 kb on + strand, within MMP_RS05125 at 978.299 kb on + strand at 978.389 kb on - strand at 978.390 kb on + strand at 978.393 kb on - strand at 978.394 kb on + strand at 978.394 kb on + strand at 978.396 kb on - strand at 978.408 kb on - strand at 978.409 kb on + strand at 978.423 kb on - strand at 978.423 kb on - strand at 978.423 kb on - strand at 978.424 kb on + strand at 978.424 kb on + strand at 978.435 kb on - strand at 978.439 kb on - strand at 978.439 kb on - strand at 978.446 kb on - strand at 978.447 kb on + strand at 978.630 kb on - strand at 978.630 kb on - strand at 978.631 kb on + strand at 978.633 kb on + strand at 978.702 kb on - strand at 978.703 kb on + strand at 978.721 kb on - strand at 978.745 kb on - strand at 978.745 kb on - strand at 978.745 kb on - strand at 978.745 kb on - strand at 978.746 kb on + strand at 978.746 kb on + strand at 978.777 kb on - strand at 978.874 kb on - strand at 978.882 kb on + strand at 978.909 kb on - strand, within MMP_RS05130 at 978.944 kb on + strand, within MMP_RS05130 at 979.233 kb on - strand, within MMP_RS05130 at 979.234 kb on + strand, within MMP_RS05130 at 979.286 kb on - strand, within MMP_RS05130 at 979.305 kb on + strand, within MMP_RS05130 at 979.330 kb on - strand, within MMP_RS05130 at 979.331 kb on + strand, within MMP_RS05130 at 979.371 kb on - strand, within MMP_RS05130 at 979.373 kb on - strand, within MMP_RS05130 at 979.374 kb on + strand, within MMP_RS05130 at 979.392 kb on - strand, within MMP_RS05130 at 979.427 kb on - strand, within MMP_RS05130 at 979.482 kb on - strand, within MMP_RS05130 at 979.503 kb on + strand, within MMP_RS05130 at 979.513 kb on + strand, within MMP_RS05130 at 979.600 kb on - strand, within MMP_RS05130 at 979.610 kb on - strand, within MMP_RS05130 at 979.611 kb on + strand, within MMP_RS05130 at 979.725 kb on + strand, within MMP_RS05130 at 979.736 kb on + strand, within MMP_RS05130 at 979.765 kb on + strand, within MMP_RS05130 at 979.765 kb on + strand, within MMP_RS05130 at 979.855 kb on - strand, within MMP_RS05130 at 979.867 kb on + strand, within MMP_RS05130 at 979.867 kb on + strand, within MMP_RS05130 at 979.868 kb on - strand, within MMP_RS05130 at 979.868 kb on - strand, within MMP_RS05130 at 979.868 kb on - strand, within MMP_RS05130 at 979.868 kb on - strand, within MMP_RS05130 at 979.868 kb on - strand, within MMP_RS05130 at 979.868 kb on - strand, within MMP_RS05130 at 979.870 kb on - strand, within MMP_RS05130 at 979.871 kb on + strand, within MMP_RS05130 at 979.871 kb on + strand, within MMP_RS05130 at 979.956 kb on + strand, within MMP_RS05130 at 979.958 kb on - strand, within MMP_RS05130 at 979.962 kb on - strand, within MMP_RS05130 at 979.969 kb on - strand, within MMP_RS05130 at 979.969 kb on - strand, within MMP_RS05130 at 979.970 kb on + strand, within MMP_RS05130 at 980.016 kb on + strand, within MMP_RS05130 at 980.065 kb on - strand, within MMP_RS05130 at 980.065 kb on - strand, within MMP_RS05130 at 980.066 kb on + strand, within MMP_RS05130 at 980.066 kb on + strand, within MMP_RS05130 at 980.067 kb on - strand, within MMP_RS05130 at 980.073 kb on - strand, within MMP_RS05130 at 980.073 kb on - strand, within MMP_RS05130 at 980.115 kb on + strand, within MMP_RS05130 at 980.115 kb on + strand, within MMP_RS05130 at 980.140 kb on + strand, within MMP_RS05130 at 980.242 kb on - strand at 980.242 kb on - strand at 980.243 kb on + strand at 980.246 kb on - strand at 980.277 kb on + strand at 980.313 kb on - strand at 980.314 kb on + strand at 980.315 kb on - strand at 980.315 kb on - strand at 980.316 kb on + strand at 980.316 kb on + strand at 980.316 kb on + strand at 980.316 kb on + strand at 980.316 kb on + strand at 980.347 kb on - strand at 980.348 kb on + strand at 980.378 kb on - strand at 980.385 kb on + strand at 980.392 kb on + strand at 980.621 kb on + strand, within MMP_RS05135 at 980.630 kb on - strand, within MMP_RS05135 at 980.660 kb on - strand, within MMP_RS05135 at 980.696 kb on - strand, within MMP_RS05135 at 980.697 kb on + strand, within MMP_RS05135 at 980.805 kb on - strand, within MMP_RS05135 at 980.805 kb on - strand, within MMP_RS05135 at 980.805 kb on - strand, within MMP_RS05135 at 980.879 kb on + strand, within MMP_RS05135 at 980.879 kb on + strand, within MMP_RS05135 at 980.936 kb on - strand, within MMP_RS05135 at 980.953 kb on - strand, within MMP_RS05135 at 980.954 kb on + strand, within MMP_RS05135 at 980.957 kb on - strand, within MMP_RS05135 at 980.957 kb on - strand, within MMP_RS05135 at 980.957 kb on - strand, within MMP_RS05135 at 980.957 kb on - strand, within MMP_RS05135 at 980.957 kb on - strand, within MMP_RS05135 at 980.957 kb on - strand, within MMP_RS05135 at 980.957 kb on - strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.958 kb on + strand, within MMP_RS05135 at 980.959 kb on - strand, within MMP_RS05135 at 980.959 kb on - strand, within MMP_RS05135 at 980.959 kb on - strand, within MMP_RS05135 at 980.959 kb on - strand, within MMP_RS05135 at 980.959 kb on - strand, within MMP_RS05135 at 980.959 kb on - strand, within MMP_RS05135 at 980.959 kb on - strand, within MMP_RS05135 at 980.959 kb on - strand, within MMP_RS05135 at 980.959 kb on - strand, within MMP_RS05135 at 980.959 kb on - strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.960 kb on + strand, within MMP_RS05135 at 980.961 kb on - strand, within MMP_RS05135 at 980.961 kb on - strand, within MMP_RS05135 at 980.961 kb on - strand, within MMP_RS05135 at 980.961 kb on - strand, within MMP_RS05135 at 980.961 kb on - strand, within MMP_RS05135 at 980.961 kb on - strand, within MMP_RS05135 at 980.961 kb on - strand, within MMP_RS05135 at 980.961 kb on - strand, within MMP_RS05135 at 980.961 kb on - strand, within MMP_RS05135 at 980.961 kb on - strand, within MMP_RS05135 at 980.962 kb on + strand, within MMP_RS05135 at 980.962 kb on + strand, within MMP_RS05135 at 980.962 kb on + strand, within MMP_RS05135 at 980.962 kb on + strand, within MMP_RS05135 at 980.962 kb on + strand, within MMP_RS05135 at 980.962 kb on + strand, within MMP_RS05135 at 980.962 kb on + strand, within MMP_RS05135 at 980.962 kb on + strand, within MMP_RS05135 at 980.963 kb on - strand, within MMP_RS05135 at 980.964 kb on + strand, within MMP_RS05135 at 980.996 kb on + strand, within MMP_RS05135 at 980.998 kb on + strand, within MMP_RS05135 at 981.230 kb on - strand, within MMP_RS05140 at 981.239 kb on - strand, within MMP_RS05140
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete sulfate 125 mM remove 977,735 - MMP_RS05125 0.19 -0.3 977,736 + MMP_RS05125 0.19 -0.6 977,736 + MMP_RS05125 0.19 +1.7 977,736 + MMP_RS05125 0.19 -0.9 977,736 + MMP_RS05125 0.19 -1.7 977,737 - MMP_RS05125 0.19 +0.7 977,739 - MMP_RS05125 0.19 +1.9 977,740 + MMP_RS05125 0.19 +0.5 977,740 + MMP_RS05125 0.19 -3.2 977,787 - MMP_RS05125 0.26 +0.6 977,788 + MMP_RS05125 0.26 -1.5 977,791 - MMP_RS05125 0.26 -0.1 977,791 - MMP_RS05125 0.26 +3.5 977,791 - MMP_RS05125 0.26 -2.9 977,792 + MMP_RS05125 0.26 +2.0 977,952 - MMP_RS05125 0.47 -0.4 978,072 - MMP_RS05125 0.63 +0.5 978,137 - MMP_RS05125 0.71 -0.2 978,193 + MMP_RS05125 0.79 -0.3 978,214 + MMP_RS05125 0.81 -0.6 978,224 + MMP_RS05125 0.83 +3.0 978,299 + -1.3 978,389 - -0.4 978,390 + +2.9 978,393 - +0.2 978,394 + -1.4 978,394 + -0.2 978,396 - -0.4 978,408 - -1.8 978,409 + +1.7 978,423 - -0.9 978,423 - +0.0 978,423 - -1.2 978,424 + -1.1 978,424 + -0.2 978,435 - -0.7 978,439 - -0.3 978,439 - -1.0 978,446 - -1.1 978,447 + -0.6 978,630 - -0.5 978,630 - -0.3 978,631 + -0.6 978,633 + -0.5 978,702 - -1.3 978,703 + -1.5 978,721 - -1.9 978,745 - -1.4 978,745 - -0.8 978,745 - -6.0 978,745 - -1.5 978,746 + -0.9 978,746 + -1.9 978,777 - -0.7 978,874 - -1.3 978,882 + -0.9 978,909 - MMP_RS05130 0.11 -0.5 978,944 + MMP_RS05130 0.13 -0.4 979,233 - MMP_RS05130 0.31 -0.1 979,234 + MMP_RS05130 0.31 -0.9 979,286 - MMP_RS05130 0.35 +1.7 979,305 + MMP_RS05130 0.36 -1.7 979,330 - MMP_RS05130 0.37 -1.8 979,331 + MMP_RS05130 0.38 -1.2 979,371 - MMP_RS05130 0.40 -0.5 979,373 - MMP_RS05130 0.40 -0.8 979,374 + MMP_RS05130 0.40 -1.4 979,392 - MMP_RS05130 0.41 -1.9 979,427 - MMP_RS05130 0.44 -0.9 979,482 - MMP_RS05130 0.47 -1.5 979,503 + MMP_RS05130 0.48 -1.6 979,513 + MMP_RS05130 0.49 -1.4 979,600 - MMP_RS05130 0.55 -0.4 979,610 - MMP_RS05130 0.55 -0.4 979,611 + MMP_RS05130 0.55 +0.1 979,725 + MMP_RS05130 0.62 -1.0 979,736 + MMP_RS05130 0.63 -1.0 979,765 + MMP_RS05130 0.65 -1.6 979,765 + MMP_RS05130 0.65 -0.6 979,855 - MMP_RS05130 0.71 -0.3 979,867 + MMP_RS05130 0.71 +0.9 979,867 + MMP_RS05130 0.71 -1.1 979,868 - MMP_RS05130 0.71 -1.4 979,868 - MMP_RS05130 0.71 -0.8 979,868 - MMP_RS05130 0.71 -2.8 979,868 - MMP_RS05130 0.71 -0.2 979,868 - MMP_RS05130 0.71 -0.5 979,868 - MMP_RS05130 0.71 -1.9 979,870 - MMP_RS05130 0.72 -0.5 979,871 + MMP_RS05130 0.72 -1.4 979,871 + MMP_RS05130 0.72 -1.0 979,956 + MMP_RS05130 0.77 -1.0 979,958 - MMP_RS05130 0.77 +0.9 979,962 - MMP_RS05130 0.77 -0.1 979,969 - MMP_RS05130 0.78 -0.7 979,969 - MMP_RS05130 0.78 -1.0 979,970 + MMP_RS05130 0.78 -1.8 980,016 + MMP_RS05130 0.81 -2.9 980,065 - MMP_RS05130 0.84 +0.8 980,065 - MMP_RS05130 0.84 +1.1 980,066 + MMP_RS05130 0.84 -0.1 980,066 + MMP_RS05130 0.84 -1.1 980,067 - MMP_RS05130 0.84 -0.8 980,073 - MMP_RS05130 0.84 +0.0 980,073 - MMP_RS05130 0.84 +0.8 980,115 + MMP_RS05130 0.87 -1.6 980,115 + MMP_RS05130 0.87 -0.8 980,140 + MMP_RS05130 0.89 -0.4 980,242 - -1.7 980,242 - -1.4 980,243 + +0.0 980,246 - +0.1 980,277 + -0.2 980,313 - -0.6 980,314 + +1.4 980,315 - -0.8 980,315 - -2.5 980,316 + -1.2 980,316 + -1.0 980,316 + -1.6 980,316 + -0.5 980,316 + -0.9 980,347 - +0.2 980,348 + +0.8 980,378 - +3.0 980,385 + -0.2 980,392 + +1.1 980,621 + MMP_RS05135 0.11 +0.8 980,630 - MMP_RS05135 0.12 -0.4 980,660 - MMP_RS05135 0.18 +0.7 980,696 - MMP_RS05135 0.25 -1.5 980,697 + MMP_RS05135 0.25 -0.5 980,805 - MMP_RS05135 0.46 -0.3 980,805 - MMP_RS05135 0.46 -1.4 980,805 - MMP_RS05135 0.46 +0.2 980,879 + MMP_RS05135 0.60 -0.5 980,879 + MMP_RS05135 0.60 +0.2 980,936 - MMP_RS05135 0.71 -1.2 980,953 - MMP_RS05135 0.74 -2.0 980,954 + MMP_RS05135 0.74 -0.8 980,957 - MMP_RS05135 0.75 -0.2 980,957 - MMP_RS05135 0.75 +0.5 980,957 - MMP_RS05135 0.75 -1.8 980,957 - MMP_RS05135 0.75 +0.1 980,957 - MMP_RS05135 0.75 -0.5 980,957 - MMP_RS05135 0.75 +2.3 980,957 - MMP_RS05135 0.75 -0.8 980,958 + MMP_RS05135 0.75 -0.4 980,958 + MMP_RS05135 0.75 -1.1 980,958 + MMP_RS05135 0.75 +0.9 980,958 + MMP_RS05135 0.75 +0.6 980,958 + MMP_RS05135 0.75 -0.8 980,958 + MMP_RS05135 0.75 -0.6 980,958 + MMP_RS05135 0.75 -0.9 980,958 + MMP_RS05135 0.75 +0.0 980,958 + MMP_RS05135 0.75 +0.2 980,958 + MMP_RS05135 0.75 +1.3 980,958 + MMP_RS05135 0.75 -2.5 980,958 + MMP_RS05135 0.75 -0.3 980,958 + MMP_RS05135 0.75 +0.4 980,958 + MMP_RS05135 0.75 +0.3 980,959 - MMP_RS05135 0.75 -1.9 980,959 - MMP_RS05135 0.75 +0.1 980,959 - MMP_RS05135 0.75 -0.9 980,959 - MMP_RS05135 0.75 +1.4 980,959 - MMP_RS05135 0.75 +0.8 980,959 - MMP_RS05135 0.75 +1.4 980,959 - MMP_RS05135 0.75 -0.9 980,959 - MMP_RS05135 0.75 -1.2 980,959 - MMP_RS05135 0.75 +1.1 980,959 - MMP_RS05135 0.75 +0.5 980,960 + MMP_RS05135 0.75 -0.9 980,960 + MMP_RS05135 0.75 -0.6 980,960 + MMP_RS05135 0.75 +2.6 980,960 + MMP_RS05135 0.75 +0.3 980,960 + MMP_RS05135 0.75 -0.6 980,960 + MMP_RS05135 0.75 +0.0 980,960 + MMP_RS05135 0.75 +0.9 980,960 + MMP_RS05135 0.75 +0.7 980,960 + MMP_RS05135 0.75 +0.4 980,960 + MMP_RS05135 0.75 +1.9 980,960 + MMP_RS05135 0.75 +0.2 980,960 + MMP_RS05135 0.75 +1.3 980,960 + MMP_RS05135 0.75 -1.9 980,960 + MMP_RS05135 0.75 +0.7 980,960 + MMP_RS05135 0.75 +4.4 980,960 + MMP_RS05135 0.75 -0.3 980,960 + MMP_RS05135 0.75 +1.1 980,960 + MMP_RS05135 0.75 -0.2 980,961 - MMP_RS05135 0.76 +0.5 980,961 - MMP_RS05135 0.76 -2.6 980,961 - MMP_RS05135 0.76 +1.3 980,961 - MMP_RS05135 0.76 -0.4 980,961 - MMP_RS05135 0.76 +0.5 980,961 - MMP_RS05135 0.76 +2.0 980,961 - MMP_RS05135 0.76 -2.2 980,961 - MMP_RS05135 0.76 +0.1 980,961 - MMP_RS05135 0.76 +0.4 980,961 - MMP_RS05135 0.76 +0.1 980,962 + MMP_RS05135 0.76 -0.8 980,962 + MMP_RS05135 0.76 +0.3 980,962 + MMP_RS05135 0.76 +0.3 980,962 + MMP_RS05135 0.76 +2.2 980,962 + MMP_RS05135 0.76 -0.2 980,962 + MMP_RS05135 0.76 +1.4 980,962 + MMP_RS05135 0.76 +0.3 980,962 + MMP_RS05135 0.76 +0.5 980,963 - MMP_RS05135 0.76 -1.9 980,964 + MMP_RS05135 0.76 -1.0 980,996 + MMP_RS05135 0.82 +1.9 980,998 + MMP_RS05135 0.83 +0.4 981,230 - MMP_RS05140 0.12 -0.8 981,239 - MMP_RS05140 0.16 +1.1
Or see this region's nucleotide sequence