Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04540

Experiment: McCas_H2_complete sulfate 125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04535 and MMP_RS04540 are separated by 89 nucleotidesMMP_RS04540 and MMP_RS04545 are separated by 13 nucleotides MMP_RS04535: MMP_RS04535 - hydroxymethylbilane synthase, at 863,940 to 864,854 _RS04535 MMP_RS04540: MMP_RS04540 - tetratricopeptide repeat protein, at 864,944 to 866,647 _RS04540 MMP_RS04545: MMP_RS04545 - methyltransferase domain-containing protein, at 866,661 to 867,458 _RS04545 Position (kb) 864 865 866 867Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 863.969 kb on - strandat 863.970 kb on + strandat 863.994 kb on - strandat 863.995 kb on + strandat 864.010 kb on - strandat 864.011 kb on + strandat 864.047 kb on - strandat 864.048 kb on + strandat 864.075 kb on + strandat 864.245 kb on + strandat 864.290 kb on + strandat 864.424 kb on - strandat 864.425 kb on + strandat 864.700 kb on - strandat 864.729 kb on + strandat 864.763 kb on - strandat 864.766 kb on - strandat 864.767 kb on + strandat 864.771 kb on + strandat 864.771 kb on + strandat 864.771 kb on + strandat 864.828 kb on + strandat 864.845 kb on - strandat 864.849 kb on - strandat 864.849 kb on - strandat 864.897 kb on - strandat 864.901 kb on - strandat 864.974 kb on - strandat 864.974 kb on - strandat 865.115 kb on - strand, within MMP_RS04540at 865.115 kb on - strand, within MMP_RS04540at 865.115 kb on - strand, within MMP_RS04540at 865.348 kb on + strand, within MMP_RS04540at 865.380 kb on - strand, within MMP_RS04540at 865.380 kb on - strand, within MMP_RS04540at 865.468 kb on - strand, within MMP_RS04540at 865.469 kb on + strand, within MMP_RS04540at 865.535 kb on - strand, within MMP_RS04540at 865.536 kb on + strand, within MMP_RS04540at 865.536 kb on + strand, within MMP_RS04540at 865.651 kb on - strand, within MMP_RS04540at 865.657 kb on + strand, within MMP_RS04540at 865.719 kb on - strand, within MMP_RS04540at 865.720 kb on + strand, within MMP_RS04540at 865.726 kb on - strand, within MMP_RS04540at 865.726 kb on - strand, within MMP_RS04540at 865.814 kb on - strand, within MMP_RS04540at 865.815 kb on + strand, within MMP_RS04540at 865.833 kb on - strand, within MMP_RS04540at 865.834 kb on + strand, within MMP_RS04540at 865.992 kb on - strand, within MMP_RS04540at 866.014 kb on + strand, within MMP_RS04540at 866.021 kb on + strand, within MMP_RS04540at 866.061 kb on - strand, within MMP_RS04540at 866.061 kb on - strand, within MMP_RS04540at 866.065 kb on + strand, within MMP_RS04540at 866.155 kb on - strand, within MMP_RS04540at 866.378 kb on - strand, within MMP_RS04540at 866.384 kb on + strand, within MMP_RS04540at 866.417 kb on - strand, within MMP_RS04540at 866.417 kb on - strand, within MMP_RS04540at 866.438 kb on - strand, within MMP_RS04540at 866.482 kb on + strandat 866.482 kb on + strandat 866.483 kb on - strandat 866.483 kb on - strandat 866.484 kb on + strandat 866.501 kb on - strandat 866.501 kb on - strandat 866.502 kb on + strandat 866.502 kb on + strandat 866.502 kb on + strandat 866.502 kb on + strandat 866.502 kb on + strandat 866.502 kb on + strandat 866.512 kb on + strandat 866.519 kb on - strandat 866.520 kb on + strandat 866.559 kb on - strandat 866.559 kb on - strandat 866.609 kb on + strandat 866.609 kb on + strandat 866.609 kb on + strandat 866.653 kb on - strandat 866.658 kb on + strandat 866.662 kb on - strandat 866.738 kb on - strandat 866.742 kb on - strand, within MMP_RS04545at 866.757 kb on - strand, within MMP_RS04545at 866.758 kb on + strand, within MMP_RS04545at 866.787 kb on + strand, within MMP_RS04545at 866.791 kb on + strand, within MMP_RS04545at 866.796 kb on - strand, within MMP_RS04545at 866.884 kb on + strand, within MMP_RS04545at 866.888 kb on - strand, within MMP_RS04545at 866.889 kb on + strand, within MMP_RS04545at 866.899 kb on - strand, within MMP_RS04545at 866.899 kb on - strand, within MMP_RS04545at 866.899 kb on - strand, within MMP_RS04545at 866.899 kb on - strand, within MMP_RS04545at 866.901 kb on - strand, within MMP_RS04545at 866.901 kb on - strand, within MMP_RS04545at 866.902 kb on + strand, within MMP_RS04545at 866.914 kb on - strand, within MMP_RS04545at 866.916 kb on - strand, within MMP_RS04545at 866.916 kb on - strand, within MMP_RS04545at 866.916 kb on - strand, within MMP_RS04545at 866.916 kb on - strand, within MMP_RS04545at 866.917 kb on + strand, within MMP_RS04545at 866.917 kb on + strand, within MMP_RS04545at 866.917 kb on + strand, within MMP_RS04545at 866.917 kb on + strand, within MMP_RS04545at 866.919 kb on - strand, within MMP_RS04545at 866.919 kb on - strand, within MMP_RS04545at 866.920 kb on + strand, within MMP_RS04545at 866.920 kb on + strand, within MMP_RS04545at 866.920 kb on + strand, within MMP_RS04545at 866.920 kb on + strand, within MMP_RS04545at 866.920 kb on + strand, within MMP_RS04545at 866.920 kb on + strand, within MMP_RS04545at 866.920 kb on + strand, within MMP_RS04545at 866.925 kb on + strand, within MMP_RS04545at 866.926 kb on - strand, within MMP_RS04545at 866.926 kb on - strand, within MMP_RS04545at 866.926 kb on - strand, within MMP_RS04545at 866.938 kb on - strand, within MMP_RS04545at 866.938 kb on - strand, within MMP_RS04545at 866.938 kb on - strand, within MMP_RS04545at 866.939 kb on + strand, within MMP_RS04545at 866.939 kb on + strand, within MMP_RS04545at 866.997 kb on + strand, within MMP_RS04545at 866.997 kb on + strand, within MMP_RS04545at 866.999 kb on - strand, within MMP_RS04545at 867.000 kb on + strand, within MMP_RS04545at 867.000 kb on + strand, within MMP_RS04545at 867.000 kb on + strand, within MMP_RS04545at 867.001 kb on - strand, within MMP_RS04545at 867.001 kb on - strand, within MMP_RS04545at 867.001 kb on - strand, within MMP_RS04545at 867.001 kb on - strand, within MMP_RS04545at 867.001 kb on - strand, within MMP_RS04545at 867.002 kb on + strand, within MMP_RS04545at 867.002 kb on + strand, within MMP_RS04545at 867.002 kb on + strand, within MMP_RS04545at 867.002 kb on + strand, within MMP_RS04545at 867.002 kb on + strand, within MMP_RS04545at 867.002 kb on + strand, within MMP_RS04545at 867.002 kb on + strand, within MMP_RS04545at 867.003 kb on - strand, within MMP_RS04545at 867.003 kb on - strand, within MMP_RS04545at 867.003 kb on - strand, within MMP_RS04545at 867.004 kb on + strand, within MMP_RS04545at 867.004 kb on + strand, within MMP_RS04545at 867.004 kb on + strand, within MMP_RS04545at 867.004 kb on + strand, within MMP_RS04545at 867.036 kb on - strand, within MMP_RS04545at 867.042 kb on + strand, within MMP_RS04545at 867.061 kb on - strand, within MMP_RS04545at 867.062 kb on + strand, within MMP_RS04545at 867.062 kb on + strand, within MMP_RS04545at 867.100 kb on + strand, within MMP_RS04545at 867.100 kb on + strand, within MMP_RS04545at 867.124 kb on + strand, within MMP_RS04545at 867.137 kb on - strand, within MMP_RS04545at 867.140 kb on - strand, within MMP_RS04545at 867.141 kb on + strand, within MMP_RS04545at 867.150 kb on - strand, within MMP_RS04545at 867.150 kb on - strand, within MMP_RS04545at 867.156 kb on + strand, within MMP_RS04545at 867.180 kb on - strand, within MMP_RS04545at 867.181 kb on + strand, within MMP_RS04545at 867.181 kb on + strand, within MMP_RS04545at 867.182 kb on - strand, within MMP_RS04545at 867.182 kb on - strand, within MMP_RS04545at 867.183 kb on + strand, within MMP_RS04545at 867.186 kb on - strand, within MMP_RS04545at 867.186 kb on - strand, within MMP_RS04545at 867.186 kb on - strand, within MMP_RS04545at 867.186 kb on - strand, within MMP_RS04545at 867.187 kb on + strand, within MMP_RS04545at 867.187 kb on + strand, within MMP_RS04545at 867.187 kb on + strand, within MMP_RS04545at 867.187 kb on + strand, within MMP_RS04545at 867.261 kb on + strand, within MMP_RS04545at 867.269 kb on - strand, within MMP_RS04545at 867.326 kb on - strand, within MMP_RS04545at 867.326 kb on - strand, within MMP_RS04545at 867.326 kb on - strand, within MMP_RS04545at 867.326 kb on - strand, within MMP_RS04545at 867.364 kb on - strand, within MMP_RS04545at 867.365 kb on + strand, within MMP_RS04545at 867.555 kb on + strandat 867.555 kb on + strandat 867.568 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete sulfate 125 mM
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863,969 - +0.8
863,970 + +0.2
863,994 - -0.7
863,995 + -2.8
864,010 - -0.7
864,011 + -1.7
864,047 - -3.7
864,048 + -0.2
864,075 + -1.9
864,245 + +0.1
864,290 + -1.3
864,424 - -2.6
864,425 + -0.9
864,700 - -3.3
864,729 + -1.2
864,763 - -1.6
864,766 - -3.9
864,767 + -1.2
864,771 + -0.4
864,771 + -3.8
864,771 + +1.0
864,828 + +1.6
864,845 - -2.3
864,849 - -0.8
864,849 - -0.3
864,897 - +0.2
864,901 - +3.8
864,974 - -1.3
864,974 - +0.6
865,115 - MMP_RS04540 0.10 +0.5
865,115 - MMP_RS04540 0.10 -0.7
865,115 - MMP_RS04540 0.10 +0.5
865,348 + MMP_RS04540 0.24 -0.2
865,380 - MMP_RS04540 0.26 +0.5
865,380 - MMP_RS04540 0.26 +0.1
865,468 - MMP_RS04540 0.31 -1.0
865,469 + MMP_RS04540 0.31 +0.4
865,535 - MMP_RS04540 0.35 -0.2
865,536 + MMP_RS04540 0.35 -1.1
865,536 + MMP_RS04540 0.35 -0.2
865,651 - MMP_RS04540 0.41 +0.8
865,657 + MMP_RS04540 0.42 -1.9
865,719 - MMP_RS04540 0.45 +0.8
865,720 + MMP_RS04540 0.46 +0.2
865,726 - MMP_RS04540 0.46 +0.1
865,726 - MMP_RS04540 0.46 +0.3
865,814 - MMP_RS04540 0.51 -0.0
865,815 + MMP_RS04540 0.51 -0.3
865,833 - MMP_RS04540 0.52 +0.5
865,834 + MMP_RS04540 0.52 +0.2
865,992 - MMP_RS04540 0.62 -0.6
866,014 + MMP_RS04540 0.63 +0.2
866,021 + MMP_RS04540 0.63 -0.2
866,061 - MMP_RS04540 0.66 -2.3
866,061 - MMP_RS04540 0.66 +0.2
866,065 + MMP_RS04540 0.66 -1.5
866,155 - MMP_RS04540 0.71 -1.8
866,378 - MMP_RS04540 0.84 -1.1
866,384 + MMP_RS04540 0.85 -1.1
866,417 - MMP_RS04540 0.86 +0.8
866,417 - MMP_RS04540 0.86 +0.1
866,438 - MMP_RS04540 0.88 +0.7
866,482 + +0.2
866,482 + -1.7
866,483 - -0.3
866,483 - +2.7
866,484 + -0.1
866,501 - +0.6
866,501 - +0.2
866,502 + +0.3
866,502 + +0.1
866,502 + +0.3
866,502 + +3.0
866,502 + -3.6
866,502 + -0.2
866,512 + -0.0
866,519 - -1.9
866,520 + +0.1
866,559 - -2.8
866,559 - -0.5
866,609 + +0.5
866,609 + -0.6
866,609 + +0.3
866,653 - -0.1
866,658 + +0.2
866,662 - -0.2
866,738 - +1.0
866,742 - MMP_RS04545 0.10 +0.3
866,757 - MMP_RS04545 0.12 -1.2
866,758 + MMP_RS04545 0.12 +0.0
866,787 + MMP_RS04545 0.16 -1.7
866,791 + MMP_RS04545 0.16 +4.3
866,796 - MMP_RS04545 0.17 -1.2
866,884 + MMP_RS04545 0.28 +0.5
866,888 - MMP_RS04545 0.28 +0.9
866,889 + MMP_RS04545 0.29 +2.5
866,899 - MMP_RS04545 0.30 -0.5
866,899 - MMP_RS04545 0.30 -0.1
866,899 - MMP_RS04545 0.30 -1.4
866,899 - MMP_RS04545 0.30 +0.7
866,901 - MMP_RS04545 0.30 -0.7
866,901 - MMP_RS04545 0.30 +0.0
866,902 + MMP_RS04545 0.30 -0.8
866,914 - MMP_RS04545 0.32 +0.1
866,916 - MMP_RS04545 0.32 +0.0
866,916 - MMP_RS04545 0.32 +0.9
866,916 - MMP_RS04545 0.32 -0.1
866,916 - MMP_RS04545 0.32 -0.9
866,917 + MMP_RS04545 0.32 -0.2
866,917 + MMP_RS04545 0.32 +0.9
866,917 + MMP_RS04545 0.32 +4.0
866,917 + MMP_RS04545 0.32 +1.1
866,919 - MMP_RS04545 0.32 -0.5
866,919 - MMP_RS04545 0.32 -0.4
866,920 + MMP_RS04545 0.32 -0.5
866,920 + MMP_RS04545 0.32 -0.4
866,920 + MMP_RS04545 0.32 +2.4
866,920 + MMP_RS04545 0.32 -2.3
866,920 + MMP_RS04545 0.32 -0.8
866,920 + MMP_RS04545 0.32 +0.5
866,920 + MMP_RS04545 0.32 +0.6
866,925 + MMP_RS04545 0.33 +2.8
866,926 - MMP_RS04545 0.33 -0.0
866,926 - MMP_RS04545 0.33 -0.2
866,926 - MMP_RS04545 0.33 +0.6
866,938 - MMP_RS04545 0.35 +0.3
866,938 - MMP_RS04545 0.35 -2.1
866,938 - MMP_RS04545 0.35 +1.3
866,939 + MMP_RS04545 0.35 +2.2
866,939 + MMP_RS04545 0.35 -1.6
866,997 + MMP_RS04545 0.42 -1.1
866,997 + MMP_RS04545 0.42 -0.8
866,999 - MMP_RS04545 0.42 +1.4
867,000 + MMP_RS04545 0.42 -0.7
867,000 + MMP_RS04545 0.42 +0.4
867,000 + MMP_RS04545 0.42 -1.0
867,001 - MMP_RS04545 0.43 -0.5
867,001 - MMP_RS04545 0.43 +1.5
867,001 - MMP_RS04545 0.43 +1.7
867,001 - MMP_RS04545 0.43 +0.5
867,001 - MMP_RS04545 0.43 +0.7
867,002 + MMP_RS04545 0.43 +2.8
867,002 + MMP_RS04545 0.43 +0.2
867,002 + MMP_RS04545 0.43 +2.9
867,002 + MMP_RS04545 0.43 +1.1
867,002 + MMP_RS04545 0.43 -1.3
867,002 + MMP_RS04545 0.43 -0.3
867,002 + MMP_RS04545 0.43 +1.9
867,003 - MMP_RS04545 0.43 +0.9
867,003 - MMP_RS04545 0.43 +0.4
867,003 - MMP_RS04545 0.43 +3.4
867,004 + MMP_RS04545 0.43 -0.3
867,004 + MMP_RS04545 0.43 +2.9
867,004 + MMP_RS04545 0.43 -1.1
867,004 + MMP_RS04545 0.43 +3.5
867,036 - MMP_RS04545 0.47 -2.0
867,042 + MMP_RS04545 0.48 -0.8
867,061 - MMP_RS04545 0.50 -0.2
867,062 + MMP_RS04545 0.50 +1.3
867,062 + MMP_RS04545 0.50 +1.4
867,100 + MMP_RS04545 0.55 -0.6
867,100 + MMP_RS04545 0.55 +3.8
867,124 + MMP_RS04545 0.58 +2.8
867,137 - MMP_RS04545 0.60 -0.1
867,140 - MMP_RS04545 0.60 +0.4
867,141 + MMP_RS04545 0.60 +0.1
867,150 - MMP_RS04545 0.61 +1.6
867,150 - MMP_RS04545 0.61 -0.4
867,156 + MMP_RS04545 0.62 -0.3
867,180 - MMP_RS04545 0.65 +0.1
867,181 + MMP_RS04545 0.65 -0.2
867,181 + MMP_RS04545 0.65 -1.0
867,182 - MMP_RS04545 0.65 -0.2
867,182 - MMP_RS04545 0.65 -0.6
867,183 + MMP_RS04545 0.65 -1.3
867,186 - MMP_RS04545 0.66 +1.8
867,186 - MMP_RS04545 0.66 +0.7
867,186 - MMP_RS04545 0.66 -0.7
867,186 - MMP_RS04545 0.66 +0.9
867,187 + MMP_RS04545 0.66 -1.4
867,187 + MMP_RS04545 0.66 +0.1
867,187 + MMP_RS04545 0.66 +0.5
867,187 + MMP_RS04545 0.66 +3.8
867,261 + MMP_RS04545 0.75 -1.7
867,269 - MMP_RS04545 0.76 -0.7
867,326 - MMP_RS04545 0.83 -1.3
867,326 - MMP_RS04545 0.83 +0.9
867,326 - MMP_RS04545 0.83 +0.1
867,326 - MMP_RS04545 0.83 -2.1
867,364 - MMP_RS04545 0.88 +2.0
867,365 + MMP_RS04545 0.88 +2.7
867,555 + -0.5
867,555 + +0.6
867,568 - +2.1

Or see this region's nucleotide sequence