Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05795

Experiment: McCas_H2_complete Calcium Chloride Dihydrate 83.3333333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05785 and MMP_RS05790 are separated by 43 nucleotidesMMP_RS05790 and MMP_RS05795 are separated by 48 nucleotidesMMP_RS05795 and MMP_RS05800 are separated by 43 nucleotides MMP_RS05785: MMP_RS05785 - ATP-binding protein, at 1,109,187 to 1,111,031 _RS05785 MMP_RS05790: MMP_RS05790 - HDIG domain-containing protein, at 1,111,075 to 1,111,638 _RS05790 MMP_RS05795: MMP_RS05795 - redox-regulated ATPase YchF, at 1,111,687 to 1,112,865 _RS05795 MMP_RS05800: MMP_RS05800 - B12-binding domain-containing radical SAM protein, at 1,112,909 to 1,114,225 _RS05800 Position (kb) 1111 1112 1113Strain fitness (log2 ratio) -3 -2 -1 0 1at 1110.996 kb on + strandat 1111.024 kb on - strandat 1111.025 kb on + strandat 1111.207 kb on - strand, within MMP_RS05790at 1111.268 kb on + strand, within MMP_RS05790at 1111.271 kb on - strand, within MMP_RS05790at 1111.271 kb on - strand, within MMP_RS05790at 1111.272 kb on + strand, within MMP_RS05790at 1111.342 kb on + strand, within MMP_RS05790at 1111.348 kb on - strand, within MMP_RS05790at 1111.367 kb on + strand, within MMP_RS05790at 1111.591 kb on - strandat 1111.592 kb on + strandat 1111.603 kb on - strandat 1111.639 kb on + strandat 1111.639 kb on + strandat 1111.915 kb on - strand, within MMP_RS05795at 1112.073 kb on + strand, within MMP_RS05795at 1112.080 kb on - strand, within MMP_RS05795at 1112.446 kb on + strand, within MMP_RS05795at 1113.009 kb on + strandat 1113.062 kb on + strand, within MMP_RS05800at 1113.120 kb on - strand, within MMP_RS05800at 1113.198 kb on + strand, within MMP_RS05800at 1113.198 kb on + strand, within MMP_RS05800at 1113.200 kb on + strand, within MMP_RS05800at 1113.203 kb on + strand, within MMP_RS05800at 1113.251 kb on - strand, within MMP_RS05800at 1113.295 kb on - strand, within MMP_RS05800at 1113.295 kb on - strand, within MMP_RS05800at 1113.295 kb on - strand, within MMP_RS05800at 1113.297 kb on - strand, within MMP_RS05800at 1113.297 kb on - strand, within MMP_RS05800at 1113.308 kb on - strand, within MMP_RS05800at 1113.338 kb on + strand, within MMP_RS05800at 1113.527 kb on - strand, within MMP_RS05800at 1113.658 kb on + strand, within MMP_RS05800at 1113.837 kb on - strand, within MMP_RS05800

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Calcium Chloride Dihydrate 83.3333333333333 mM
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1,110,996 + -2.4
1,111,024 - -1.0
1,111,025 + -0.9
1,111,207 - MMP_RS05790 0.23 -0.3
1,111,268 + MMP_RS05790 0.34 +1.2
1,111,271 - MMP_RS05790 0.35 +0.7
1,111,271 - MMP_RS05790 0.35 +1.0
1,111,272 + MMP_RS05790 0.35 -0.3
1,111,342 + MMP_RS05790 0.47 -0.9
1,111,348 - MMP_RS05790 0.48 +0.5
1,111,367 + MMP_RS05790 0.52 -0.3
1,111,591 - +0.8
1,111,592 + +0.1
1,111,603 - -0.5
1,111,639 + -0.3
1,111,639 + +0.6
1,111,915 - MMP_RS05795 0.19 -1.6
1,112,073 + MMP_RS05795 0.33 +0.1
1,112,080 - MMP_RS05795 0.33 -0.1
1,112,446 + MMP_RS05795 0.64 -1.3
1,113,009 + -1.5
1,113,062 + MMP_RS05800 0.12 -0.1
1,113,120 - MMP_RS05800 0.16 -0.5
1,113,198 + MMP_RS05800 0.22 +0.6
1,113,198 + MMP_RS05800 0.22 -1.9
1,113,200 + MMP_RS05800 0.22 -1.9
1,113,203 + MMP_RS05800 0.22 -0.4
1,113,251 - MMP_RS05800 0.26 -3.2
1,113,295 - MMP_RS05800 0.29 -3.5
1,113,295 - MMP_RS05800 0.29 -0.8
1,113,295 - MMP_RS05800 0.29 -0.6
1,113,297 - MMP_RS05800 0.29 -1.9
1,113,297 - MMP_RS05800 0.29 -1.1
1,113,308 - MMP_RS05800 0.30 -1.0
1,113,338 + MMP_RS05800 0.33 +0.5
1,113,527 - MMP_RS05800 0.47 +0.2
1,113,658 + MMP_RS05800 0.57 -2.4
1,113,837 - MMP_RS05800 0.70 -0.6

Or see this region's nucleotide sequence