Experiment: McCas_H2_complete Calcium Chloride Dihydrate 83.3333333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04835 and MMP_RS04840 are separated by 15 nucleotides MMP_RS04840 and MMP_RS04845 are separated by 84 nucleotides MMP_RS04845 and MMP_RS04850 are separated by 275 nucleotides MMP_RS04850 and MMP_RS04855 are separated by 5 nucleotides
MMP_RS04835: MMP_RS04835 - chemotaxis protein CheC, at 920,951 to 921,640
_RS04835
MMP_RS04840: MMP_RS04840 - response regulator, at 921,656 to 922,027
_RS04840
MMP_RS04845: MMP_RS04845 - CheF family chemotaxis protein, at 922,112 to 923,158
_RS04845
MMP_RS04850: MMP_RS04850 - UPF0254 family protein, at 923,434 to 923,931
_RS04850
MMP_RS04855: MMP_RS04855 - shikimate dehydrogenase, at 923,937 to 924,773
_RS04855
Position (kb) 922
923
924 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 921.160 kb on - strand, within MMP_RS04835 at 921.161 kb on + strand, within MMP_RS04835 at 921.167 kb on + strand, within MMP_RS04835 at 921.383 kb on + strand, within MMP_RS04835 at 921.408 kb on + strand, within MMP_RS04835 at 921.408 kb on + strand, within MMP_RS04835 at 921.434 kb on - strand, within MMP_RS04835 at 921.543 kb on + strand, within MMP_RS04835 at 921.643 kb on - strand at 921.710 kb on - strand, within MMP_RS04840 at 921.711 kb on + strand, within MMP_RS04840 at 921.715 kb on - strand, within MMP_RS04840 at 921.715 kb on - strand, within MMP_RS04840 at 921.716 kb on + strand, within MMP_RS04840 at 921.716 kb on + strand, within MMP_RS04840 at 921.717 kb on - strand, within MMP_RS04840 at 921.718 kb on + strand, within MMP_RS04840 at 921.718 kb on + strand, within MMP_RS04840 at 921.737 kb on - strand, within MMP_RS04840 at 921.738 kb on + strand, within MMP_RS04840 at 921.776 kb on + strand, within MMP_RS04840 at 921.783 kb on + strand, within MMP_RS04840 at 921.783 kb on + strand, within MMP_RS04840 at 921.785 kb on - strand, within MMP_RS04840 at 921.898 kb on - strand, within MMP_RS04840 at 921.940 kb on + strand, within MMP_RS04840 at 921.998 kb on - strand at 921.999 kb on + strand at 922.031 kb on - strand at 922.032 kb on + strand at 922.032 kb on + strand at 922.046 kb on + strand at 922.063 kb on - strand at 922.063 kb on - strand at 922.074 kb on - strand at 922.077 kb on - strand at 922.077 kb on - strand at 922.077 kb on - strand at 922.078 kb on + strand at 922.080 kb on - strand at 922.086 kb on - strand at 922.097 kb on - strand at 922.097 kb on - strand at 922.097 kb on - strand at 922.097 kb on - strand at 922.098 kb on + strand at 922.098 kb on + strand at 922.098 kb on + strand at 922.098 kb on + strand at 922.101 kb on - strand at 922.102 kb on + strand at 922.108 kb on - strand at 922.109 kb on + strand at 922.109 kb on + strand at 922.109 kb on + strand at 922.124 kb on + strand at 922.124 kb on + strand at 922.127 kb on + strand at 922.129 kb on - strand at 922.138 kb on - strand at 922.139 kb on + strand at 922.139 kb on + strand at 922.177 kb on - strand at 922.184 kb on + strand at 922.258 kb on - strand, within MMP_RS04845 at 922.290 kb on - strand, within MMP_RS04845 at 922.292 kb on - strand, within MMP_RS04845 at 922.469 kb on - strand, within MMP_RS04845 at 922.570 kb on - strand, within MMP_RS04845 at 922.601 kb on + strand, within MMP_RS04845 at 922.637 kb on - strand, within MMP_RS04845 at 922.806 kb on + strand, within MMP_RS04845 at 922.869 kb on + strand, within MMP_RS04845 at 922.915 kb on + strand, within MMP_RS04845 at 922.988 kb on - strand, within MMP_RS04845 at 923.098 kb on - strand at 923.099 kb on + strand at 923.206 kb on + strand at 923.217 kb on - strand at 923.217 kb on - strand at 923.217 kb on - strand at 923.220 kb on - strand at 923.221 kb on + strand at 923.232 kb on - strand at 923.233 kb on + strand at 923.249 kb on + strand at 923.262 kb on - strand at 923.263 kb on + strand at 923.267 kb on + strand at 923.268 kb on - strand at 923.298 kb on - strand at 923.299 kb on + strand at 923.310 kb on + strand at 923.313 kb on - strand at 923.328 kb on - strand at 923.333 kb on - strand at 923.339 kb on - strand at 923.348 kb on + strand at 923.357 kb on - strand at 923.357 kb on - strand at 923.357 kb on - strand at 923.361 kb on - strand at 923.376 kb on - strand at 923.379 kb on - strand at 923.379 kb on - strand at 923.379 kb on - strand at 923.382 kb on + strand at 923.392 kb on - strand at 923.397 kb on + strand at 923.415 kb on + strand at 923.422 kb on + strand at 923.536 kb on - strand, within MMP_RS04850 at 923.536 kb on - strand, within MMP_RS04850 at 923.537 kb on + strand, within MMP_RS04850 at 923.541 kb on - strand, within MMP_RS04850 at 923.542 kb on + strand, within MMP_RS04850 at 923.558 kb on - strand, within MMP_RS04850 at 923.558 kb on - strand, within MMP_RS04850 at 923.558 kb on - strand, within MMP_RS04850 at 923.558 kb on - strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.560 kb on - strand, within MMP_RS04850 at 923.560 kb on - strand, within MMP_RS04850 at 923.560 kb on - strand, within MMP_RS04850 at 923.560 kb on - strand, within MMP_RS04850 at 923.560 kb on - strand, within MMP_RS04850 at 923.561 kb on + strand, within MMP_RS04850 at 923.561 kb on + strand, within MMP_RS04850 at 923.561 kb on + strand, within MMP_RS04850 at 923.564 kb on - strand, within MMP_RS04850 at 923.565 kb on + strand, within MMP_RS04850 at 923.565 kb on + strand, within MMP_RS04850 at 923.565 kb on + strand, within MMP_RS04850 at 923.565 kb on + strand, within MMP_RS04850 at 923.565 kb on + strand, within MMP_RS04850 at 923.565 kb on + strand, within MMP_RS04850 at 923.565 kb on + strand, within MMP_RS04850 at 923.612 kb on - strand, within MMP_RS04850 at 923.663 kb on + strand, within MMP_RS04850 at 923.664 kb on - strand, within MMP_RS04850 at 923.665 kb on + strand, within MMP_RS04850 at 923.681 kb on - strand, within MMP_RS04850 at 923.696 kb on - strand, within MMP_RS04850 at 923.733 kb on - strand, within MMP_RS04850 at 923.779 kb on + strand, within MMP_RS04850 at 923.784 kb on + strand, within MMP_RS04850 at 923.791 kb on - strand, within MMP_RS04850 at 923.791 kb on - strand, within MMP_RS04850 at 923.801 kb on + strand, within MMP_RS04850 at 923.801 kb on + strand, within MMP_RS04850 at 923.801 kb on + strand, within MMP_RS04850 at 923.817 kb on - strand, within MMP_RS04850 at 923.818 kb on + strand, within MMP_RS04850 at 923.822 kb on + strand, within MMP_RS04850 at 923.832 kb on + strand, within MMP_RS04850 at 923.849 kb on - strand, within MMP_RS04850 at 923.850 kb on + strand, within MMP_RS04850 at 923.850 kb on + strand, within MMP_RS04850 at 923.850 kb on + strand, within MMP_RS04850 at 923.885 kb on + strand at 923.885 kb on + strand at 923.885 kb on + strand at 923.887 kb on + strand at 923.887 kb on + strand at 923.887 kb on + strand at 923.889 kb on - strand at 923.890 kb on + strand at 923.890 kb on + strand at 923.890 kb on + strand at 923.890 kb on + strand at 923.960 kb on + strand at 924.032 kb on - strand at 924.091 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Calcium Chloride Dihydrate 83.3333333333333 mM remove 921,160 - MMP_RS04835 0.30 -1.3 921,161 + MMP_RS04835 0.30 -2.7 921,167 + MMP_RS04835 0.31 -1.2 921,383 + MMP_RS04835 0.63 -1.0 921,408 + MMP_RS04835 0.66 -1.0 921,408 + MMP_RS04835 0.66 -0.4 921,434 - MMP_RS04835 0.70 -1.1 921,543 + MMP_RS04835 0.86 -0.6 921,643 - -1.9 921,710 - MMP_RS04840 0.15 -1.1 921,711 + MMP_RS04840 0.15 -3.7 921,715 - MMP_RS04840 0.16 -1.2 921,715 - MMP_RS04840 0.16 -1.6 921,716 + MMP_RS04840 0.16 -1.6 921,716 + MMP_RS04840 0.16 -1.1 921,717 - MMP_RS04840 0.16 -2.1 921,718 + MMP_RS04840 0.17 -0.5 921,718 + MMP_RS04840 0.17 -0.5 921,737 - MMP_RS04840 0.22 -0.6 921,738 + MMP_RS04840 0.22 -1.2 921,776 + MMP_RS04840 0.32 -1.2 921,783 + MMP_RS04840 0.34 -0.7 921,783 + MMP_RS04840 0.34 -0.2 921,785 - MMP_RS04840 0.35 -0.7 921,898 - MMP_RS04840 0.65 -0.7 921,940 + MMP_RS04840 0.76 -1.3 921,998 - -0.8 921,999 + -0.9 922,031 - -1.1 922,032 + -0.7 922,032 + -0.1 922,046 + -0.5 922,063 - +0.0 922,063 - -1.9 922,074 - -0.3 922,077 - -0.7 922,077 - -0.6 922,077 - -1.7 922,078 + +0.0 922,080 - +0.1 922,086 - -1.2 922,097 - -0.0 922,097 - +0.6 922,097 - -2.4 922,097 - +0.4 922,098 + +1.1 922,098 + -0.7 922,098 + +1.2 922,098 + -2.3 922,101 - +0.7 922,102 + -1.3 922,108 - -0.6 922,109 + -3.4 922,109 + -0.0 922,109 + -0.5 922,124 + -0.7 922,124 + -1.4 922,127 + -0.3 922,129 - -0.6 922,138 - -1.3 922,139 + -2.0 922,139 + -1.5 922,177 - -1.0 922,184 + -1.8 922,258 - MMP_RS04845 0.14 -0.7 922,290 - MMP_RS04845 0.17 -2.1 922,292 - MMP_RS04845 0.17 -0.4 922,469 - MMP_RS04845 0.34 -1.2 922,570 - MMP_RS04845 0.44 -1.6 922,601 + MMP_RS04845 0.47 -5.5 922,637 - MMP_RS04845 0.50 -3.0 922,806 + MMP_RS04845 0.66 -4.3 922,869 + MMP_RS04845 0.72 -0.9 922,915 + MMP_RS04845 0.77 -1.6 922,988 - MMP_RS04845 0.84 -2.5 923,098 - -0.0 923,099 + -1.9 923,206 + -0.9 923,217 - +0.4 923,217 - +0.2 923,217 - +0.7 923,220 - -0.7 923,221 + -2.0 923,232 - +1.0 923,233 + +0.0 923,249 + +0.1 923,262 - +0.3 923,263 + +1.9 923,267 + +1.3 923,268 - -0.2 923,298 - -1.2 923,299 + +1.6 923,310 + +0.7 923,313 - +0.7 923,328 - +0.1 923,333 - -0.2 923,339 - -2.1 923,348 + +1.1 923,357 - +1.6 923,357 - +0.9 923,357 - -0.5 923,361 - -0.3 923,376 - +0.9 923,379 - +0.6 923,379 - +0.8 923,379 - -0.5 923,382 + +0.4 923,392 - -1.9 923,397 + +0.9 923,415 + -3.1 923,422 + +1.7 923,536 - MMP_RS04850 0.20 +0.1 923,536 - MMP_RS04850 0.20 +1.3 923,537 + MMP_RS04850 0.21 -3.2 923,541 - MMP_RS04850 0.21 -0.9 923,542 + MMP_RS04850 0.22 -0.5 923,558 - MMP_RS04850 0.25 -1.2 923,558 - MMP_RS04850 0.25 -2.7 923,558 - MMP_RS04850 0.25 +0.1 923,558 - MMP_RS04850 0.25 -3.0 923,559 + MMP_RS04850 0.25 -2.0 923,559 + MMP_RS04850 0.25 -0.8 923,559 + MMP_RS04850 0.25 -1.0 923,559 + MMP_RS04850 0.25 -4.3 923,559 + MMP_RS04850 0.25 +0.8 923,559 + MMP_RS04850 0.25 -1.7 923,559 + MMP_RS04850 0.25 -1.8 923,559 + MMP_RS04850 0.25 -0.1 923,559 + MMP_RS04850 0.25 -0.7 923,560 - MMP_RS04850 0.25 -3.7 923,560 - MMP_RS04850 0.25 -0.0 923,560 - MMP_RS04850 0.25 -1.8 923,560 - MMP_RS04850 0.25 -0.3 923,560 - MMP_RS04850 0.25 -0.8 923,561 + MMP_RS04850 0.26 -1.9 923,561 + MMP_RS04850 0.26 -1.9 923,561 + MMP_RS04850 0.26 -0.1 923,564 - MMP_RS04850 0.26 -2.0 923,565 + MMP_RS04850 0.26 -0.8 923,565 + MMP_RS04850 0.26 -1.0 923,565 + MMP_RS04850 0.26 -1.3 923,565 + MMP_RS04850 0.26 -0.5 923,565 + MMP_RS04850 0.26 +0.3 923,565 + MMP_RS04850 0.26 -0.9 923,565 + MMP_RS04850 0.26 +0.8 923,612 - MMP_RS04850 0.36 -1.5 923,663 + MMP_RS04850 0.46 -1.4 923,664 - MMP_RS04850 0.46 -1.0 923,665 + MMP_RS04850 0.46 -1.1 923,681 - MMP_RS04850 0.50 +0.2 923,696 - MMP_RS04850 0.53 -0.5 923,733 - MMP_RS04850 0.60 -1.0 923,779 + MMP_RS04850 0.69 -0.3 923,784 + MMP_RS04850 0.70 +0.1 923,791 - MMP_RS04850 0.72 -0.9 923,791 - MMP_RS04850 0.72 +1.2 923,801 + MMP_RS04850 0.74 -0.5 923,801 + MMP_RS04850 0.74 -1.5 923,801 + MMP_RS04850 0.74 -1.4 923,817 - MMP_RS04850 0.77 -0.7 923,818 + MMP_RS04850 0.77 -1.1 923,822 + MMP_RS04850 0.78 -0.7 923,832 + MMP_RS04850 0.80 +0.8 923,849 - MMP_RS04850 0.83 -2.1 923,850 + MMP_RS04850 0.84 -1.6 923,850 + MMP_RS04850 0.84 -3.6 923,850 + MMP_RS04850 0.84 -1.1 923,885 + -0.9 923,885 + +0.4 923,885 + -1.0 923,887 + -1.1 923,887 + +0.4 923,887 + -0.0 923,889 - -0.0 923,890 + +0.5 923,890 + -2.6 923,890 + -1.3 923,890 + +0.2 923,960 + -3.9 924,032 - -2.2 924,091 - -2.7
Or see this region's nucleotide sequence