Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04840

Experiment: McCas_H2_complete Calcium Chloride Dihydrate 83.3333333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04830 and MMP_RS04835 are separated by 20 nucleotidesMMP_RS04835 and MMP_RS04840 are separated by 15 nucleotidesMMP_RS04840 and MMP_RS04845 are separated by 84 nucleotides MMP_RS04830: MMP_RS04830 - chemotaxis protein CheC, at 920,322 to 920,930 _RS04830 MMP_RS04835: MMP_RS04835 - chemotaxis protein CheC, at 920,951 to 921,640 _RS04835 MMP_RS04840: MMP_RS04840 - response regulator, at 921,656 to 922,027 _RS04840 MMP_RS04845: MMP_RS04845 - CheF family chemotaxis protein, at 922,112 to 923,158 _RS04845 Position (kb) 921 922 923Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 920.791 kb on - strand, within MMP_RS04830at 920.791 kb on - strand, within MMP_RS04830at 920.792 kb on + strand, within MMP_RS04830at 920.810 kb on - strand, within MMP_RS04830at 920.819 kb on - strand, within MMP_RS04830at 920.847 kb on + strand, within MMP_RS04830at 920.906 kb on - strandat 920.907 kb on + strandat 920.910 kb on - strandat 920.934 kb on + strandat 920.996 kb on - strandat 921.005 kb on - strandat 921.006 kb on + strandat 921.055 kb on - strand, within MMP_RS04835at 921.107 kb on - strand, within MMP_RS04835at 921.107 kb on - strand, within MMP_RS04835at 921.160 kb on - strand, within MMP_RS04835at 921.161 kb on + strand, within MMP_RS04835at 921.167 kb on + strand, within MMP_RS04835at 921.383 kb on + strand, within MMP_RS04835at 921.408 kb on + strand, within MMP_RS04835at 921.408 kb on + strand, within MMP_RS04835at 921.434 kb on - strand, within MMP_RS04835at 921.543 kb on + strand, within MMP_RS04835at 921.643 kb on - strandat 921.710 kb on - strand, within MMP_RS04840at 921.711 kb on + strand, within MMP_RS04840at 921.715 kb on - strand, within MMP_RS04840at 921.715 kb on - strand, within MMP_RS04840at 921.716 kb on + strand, within MMP_RS04840at 921.716 kb on + strand, within MMP_RS04840at 921.717 kb on - strand, within MMP_RS04840at 921.718 kb on + strand, within MMP_RS04840at 921.718 kb on + strand, within MMP_RS04840at 921.737 kb on - strand, within MMP_RS04840at 921.738 kb on + strand, within MMP_RS04840at 921.776 kb on + strand, within MMP_RS04840at 921.783 kb on + strand, within MMP_RS04840at 921.783 kb on + strand, within MMP_RS04840at 921.785 kb on - strand, within MMP_RS04840at 921.898 kb on - strand, within MMP_RS04840at 921.940 kb on + strand, within MMP_RS04840at 921.998 kb on - strandat 921.999 kb on + strandat 922.031 kb on - strandat 922.032 kb on + strandat 922.032 kb on + strandat 922.046 kb on + strandat 922.063 kb on - strandat 922.063 kb on - strandat 922.074 kb on - strandat 922.077 kb on - strandat 922.077 kb on - strandat 922.077 kb on - strandat 922.078 kb on + strandat 922.080 kb on - strandat 922.086 kb on - strandat 922.097 kb on - strandat 922.097 kb on - strandat 922.097 kb on - strandat 922.097 kb on - strandat 922.098 kb on + strandat 922.098 kb on + strandat 922.098 kb on + strandat 922.098 kb on + strandat 922.101 kb on - strandat 922.102 kb on + strandat 922.108 kb on - strandat 922.109 kb on + strandat 922.109 kb on + strandat 922.109 kb on + strandat 922.124 kb on + strandat 922.124 kb on + strandat 922.127 kb on + strandat 922.129 kb on - strandat 922.138 kb on - strandat 922.139 kb on + strandat 922.139 kb on + strandat 922.177 kb on - strandat 922.184 kb on + strandat 922.258 kb on - strand, within MMP_RS04845at 922.290 kb on - strand, within MMP_RS04845at 922.292 kb on - strand, within MMP_RS04845at 922.469 kb on - strand, within MMP_RS04845at 922.570 kb on - strand, within MMP_RS04845at 922.601 kb on + strand, within MMP_RS04845at 922.637 kb on - strand, within MMP_RS04845at 922.806 kb on + strand, within MMP_RS04845at 922.869 kb on + strand, within MMP_RS04845at 922.915 kb on + strand, within MMP_RS04845at 922.988 kb on - strand, within MMP_RS04845

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Calcium Chloride Dihydrate 83.3333333333333 mM
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920,791 - MMP_RS04830 0.77 -0.6
920,791 - MMP_RS04830 0.77 -0.9
920,792 + MMP_RS04830 0.77 -0.3
920,810 - MMP_RS04830 0.80 -0.4
920,819 - MMP_RS04830 0.82 -0.8
920,847 + MMP_RS04830 0.86 +0.5
920,906 - +0.3
920,907 + -0.5
920,910 - -0.7
920,934 + -1.3
920,996 - -0.4
921,005 - -2.6
921,006 + -2.5
921,055 - MMP_RS04835 0.15 -4.0
921,107 - MMP_RS04835 0.23 -0.7
921,107 - MMP_RS04835 0.23 -1.3
921,160 - MMP_RS04835 0.30 -1.3
921,161 + MMP_RS04835 0.30 -2.7
921,167 + MMP_RS04835 0.31 -1.2
921,383 + MMP_RS04835 0.63 -1.0
921,408 + MMP_RS04835 0.66 -1.0
921,408 + MMP_RS04835 0.66 -0.4
921,434 - MMP_RS04835 0.70 -1.1
921,543 + MMP_RS04835 0.86 -0.6
921,643 - -1.9
921,710 - MMP_RS04840 0.15 -1.1
921,711 + MMP_RS04840 0.15 -3.7
921,715 - MMP_RS04840 0.16 -1.2
921,715 - MMP_RS04840 0.16 -1.6
921,716 + MMP_RS04840 0.16 -1.6
921,716 + MMP_RS04840 0.16 -1.1
921,717 - MMP_RS04840 0.16 -2.1
921,718 + MMP_RS04840 0.17 -0.5
921,718 + MMP_RS04840 0.17 -0.5
921,737 - MMP_RS04840 0.22 -0.6
921,738 + MMP_RS04840 0.22 -1.2
921,776 + MMP_RS04840 0.32 -1.2
921,783 + MMP_RS04840 0.34 -0.7
921,783 + MMP_RS04840 0.34 -0.2
921,785 - MMP_RS04840 0.35 -0.7
921,898 - MMP_RS04840 0.65 -0.7
921,940 + MMP_RS04840 0.76 -1.3
921,998 - -0.8
921,999 + -0.9
922,031 - -1.1
922,032 + -0.7
922,032 + -0.1
922,046 + -0.5
922,063 - +0.0
922,063 - -1.9
922,074 - -0.3
922,077 - -0.7
922,077 - -0.6
922,077 - -1.7
922,078 + +0.0
922,080 - +0.1
922,086 - -1.2
922,097 - -0.0
922,097 - +0.6
922,097 - -2.4
922,097 - +0.4
922,098 + +1.1
922,098 + -0.7
922,098 + +1.2
922,098 + -2.3
922,101 - +0.7
922,102 + -1.3
922,108 - -0.6
922,109 + -3.4
922,109 + -0.0
922,109 + -0.5
922,124 + -0.7
922,124 + -1.4
922,127 + -0.3
922,129 - -0.6
922,138 - -1.3
922,139 + -2.0
922,139 + -1.5
922,177 - -1.0
922,184 + -1.8
922,258 - MMP_RS04845 0.14 -0.7
922,290 - MMP_RS04845 0.17 -2.1
922,292 - MMP_RS04845 0.17 -0.4
922,469 - MMP_RS04845 0.34 -1.2
922,570 - MMP_RS04845 0.44 -1.6
922,601 + MMP_RS04845 0.47 -5.5
922,637 - MMP_RS04845 0.50 -3.0
922,806 + MMP_RS04845 0.66 -4.3
922,869 + MMP_RS04845 0.72 -0.9
922,915 + MMP_RS04845 0.77 -1.6
922,988 - MMP_RS04845 0.84 -2.5

Or see this region's nucleotide sequence