Experiment: McCas_H2_complete Calcium Chloride Dihydrate 83.3333333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04820 and MMP_RS04825 are separated by 25 nucleotides MMP_RS04825 and MMP_RS04830 are separated by 70 nucleotides MMP_RS04830 and MMP_RS04835 are separated by 20 nucleotides
MMP_RS04820: MMP_RS04820 - methyl-accepting chemotaxis protein, at 918,010 to 919,413
_RS04820
MMP_RS04825: MMP_RS04825 - protein-glutamate O-methyltransferase CheR, at 919,439 to 920,251
_RS04825
MMP_RS04830: MMP_RS04830 - chemotaxis protein CheC, at 920,322 to 920,930
_RS04830
MMP_RS04835: MMP_RS04835 - chemotaxis protein CheC, at 920,951 to 921,640
_RS04835
Position (kb) 919
920
921 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 918.450 kb on + strand, within MMP_RS04820 at 918.453 kb on - strand, within MMP_RS04820 at 918.453 kb on - strand, within MMP_RS04820 at 918.453 kb on - strand, within MMP_RS04820 at 918.453 kb on - strand, within MMP_RS04820 at 918.454 kb on + strand, within MMP_RS04820 at 918.467 kb on - strand, within MMP_RS04820 at 918.470 kb on - strand, within MMP_RS04820 at 918.470 kb on - strand, within MMP_RS04820 at 918.470 kb on - strand, within MMP_RS04820 at 918.470 kb on - strand, within MMP_RS04820 at 918.470 kb on - strand, within MMP_RS04820 at 918.471 kb on + strand, within MMP_RS04820 at 918.471 kb on + strand, within MMP_RS04820 at 918.471 kb on + strand, within MMP_RS04820 at 918.488 kb on - strand, within MMP_RS04820 at 918.644 kb on - strand, within MMP_RS04820 at 918.644 kb on - strand, within MMP_RS04820 at 918.965 kb on - strand, within MMP_RS04820 at 918.982 kb on + strand, within MMP_RS04820 at 919.020 kb on - strand, within MMP_RS04820 at 919.027 kb on + strand, within MMP_RS04820 at 919.043 kb on - strand, within MMP_RS04820 at 919.062 kb on - strand, within MMP_RS04820 at 919.074 kb on + strand, within MMP_RS04820 at 919.110 kb on - strand, within MMP_RS04820 at 919.149 kb on + strand, within MMP_RS04820 at 919.149 kb on + strand, within MMP_RS04820 at 919.296 kb on + strand at 919.359 kb on + strand at 919.391 kb on - strand at 919.392 kb on + strand at 919.392 kb on + strand at 919.396 kb on + strand at 919.412 kb on + strand at 919.412 kb on + strand at 919.489 kb on - strand at 919.539 kb on + strand, within MMP_RS04825 at 919.543 kb on + strand, within MMP_RS04825 at 919.581 kb on + strand, within MMP_RS04825 at 919.595 kb on + strand, within MMP_RS04825 at 919.609 kb on + strand, within MMP_RS04825 at 919.616 kb on + strand, within MMP_RS04825 at 919.616 kb on + strand, within MMP_RS04825 at 919.624 kb on - strand, within MMP_RS04825 at 919.663 kb on - strand, within MMP_RS04825 at 919.663 kb on - strand, within MMP_RS04825 at 919.746 kb on - strand, within MMP_RS04825 at 919.747 kb on + strand, within MMP_RS04825 at 919.750 kb on - strand, within MMP_RS04825 at 919.854 kb on + strand, within MMP_RS04825 at 919.972 kb on - strand, within MMP_RS04825 at 919.980 kb on + strand, within MMP_RS04825 at 920.014 kb on + strand, within MMP_RS04825 at 920.048 kb on - strand, within MMP_RS04825 at 920.048 kb on - strand, within MMP_RS04825 at 920.054 kb on + strand, within MMP_RS04825 at 920.060 kb on + strand, within MMP_RS04825 at 920.101 kb on + strand, within MMP_RS04825 at 920.101 kb on + strand, within MMP_RS04825 at 920.109 kb on - strand, within MMP_RS04825 at 920.109 kb on - strand, within MMP_RS04825 at 920.162 kb on - strand, within MMP_RS04825 at 920.169 kb on - strand, within MMP_RS04825 at 920.169 kb on - strand, within MMP_RS04825 at 920.170 kb on + strand at 920.170 kb on + strand at 920.173 kb on - strand at 920.173 kb on - strand at 920.173 kb on - strand at 920.174 kb on + strand at 920.174 kb on + strand at 920.174 kb on + strand at 920.196 kb on + strand at 920.201 kb on - strand at 920.225 kb on + strand at 920.238 kb on - strand at 920.238 kb on - strand at 920.242 kb on - strand at 920.243 kb on + strand at 920.243 kb on + strand at 920.243 kb on + strand at 920.266 kb on - strand at 920.266 kb on - strand at 920.266 kb on - strand at 920.266 kb on - strand at 920.267 kb on + strand at 920.267 kb on + strand at 920.294 kb on + strand at 920.316 kb on - strand at 920.319 kb on - strand at 920.319 kb on - strand at 920.323 kb on - strand at 920.358 kb on - strand at 920.359 kb on + strand at 920.359 kb on + strand at 920.359 kb on + strand at 920.402 kb on - strand, within MMP_RS04830 at 920.402 kb on - strand, within MMP_RS04830 at 920.403 kb on + strand, within MMP_RS04830 at 920.406 kb on - strand, within MMP_RS04830 at 920.406 kb on - strand, within MMP_RS04830 at 920.407 kb on + strand, within MMP_RS04830 at 920.411 kb on - strand, within MMP_RS04830 at 920.429 kb on - strand, within MMP_RS04830 at 920.430 kb on + strand, within MMP_RS04830 at 920.444 kb on - strand, within MMP_RS04830 at 920.478 kb on + strand, within MMP_RS04830 at 920.478 kb on + strand, within MMP_RS04830 at 920.478 kb on + strand, within MMP_RS04830 at 920.480 kb on - strand, within MMP_RS04830 at 920.480 kb on - strand, within MMP_RS04830 at 920.514 kb on - strand, within MMP_RS04830 at 920.515 kb on + strand, within MMP_RS04830 at 920.532 kb on - strand, within MMP_RS04830 at 920.533 kb on + strand, within MMP_RS04830 at 920.547 kb on - strand, within MMP_RS04830 at 920.653 kb on + strand, within MMP_RS04830 at 920.791 kb on - strand, within MMP_RS04830 at 920.791 kb on - strand, within MMP_RS04830 at 920.792 kb on + strand, within MMP_RS04830 at 920.810 kb on - strand, within MMP_RS04830 at 920.819 kb on - strand, within MMP_RS04830 at 920.847 kb on + strand, within MMP_RS04830 at 920.906 kb on - strand at 920.907 kb on + strand at 920.910 kb on - strand at 920.934 kb on + strand at 920.996 kb on - strand at 921.005 kb on - strand at 921.006 kb on + strand at 921.055 kb on - strand, within MMP_RS04835 at 921.107 kb on - strand, within MMP_RS04835 at 921.107 kb on - strand, within MMP_RS04835 at 921.160 kb on - strand, within MMP_RS04835 at 921.161 kb on + strand, within MMP_RS04835 at 921.167 kb on + strand, within MMP_RS04835
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Calcium Chloride Dihydrate 83.3333333333333 mM remove 918,450 + MMP_RS04820 0.31 +0.7 918,453 - MMP_RS04820 0.32 +1.1 918,453 - MMP_RS04820 0.32 +0.5 918,453 - MMP_RS04820 0.32 -0.0 918,453 - MMP_RS04820 0.32 -0.8 918,454 + MMP_RS04820 0.32 -1.2 918,467 - MMP_RS04820 0.33 -0.3 918,470 - MMP_RS04820 0.33 +0.3 918,470 - MMP_RS04820 0.33 -0.5 918,470 - MMP_RS04820 0.33 +0.5 918,470 - MMP_RS04820 0.33 +0.8 918,470 - MMP_RS04820 0.33 -0.3 918,471 + MMP_RS04820 0.33 -0.6 918,471 + MMP_RS04820 0.33 -0.9 918,471 + MMP_RS04820 0.33 -0.4 918,488 - MMP_RS04820 0.34 +0.9 918,644 - MMP_RS04820 0.45 +0.3 918,644 - MMP_RS04820 0.45 -1.0 918,965 - MMP_RS04820 0.68 -0.4 918,982 + MMP_RS04820 0.69 -0.3 919,020 - MMP_RS04820 0.72 -1.4 919,027 + MMP_RS04820 0.72 -0.5 919,043 - MMP_RS04820 0.74 +1.3 919,062 - MMP_RS04820 0.75 -2.2 919,074 + MMP_RS04820 0.76 +0.5 919,110 - MMP_RS04820 0.78 +0.6 919,149 + MMP_RS04820 0.81 +0.2 919,149 + MMP_RS04820 0.81 -0.2 919,296 + -1.9 919,359 + +0.4 919,391 - -1.5 919,392 + +0.1 919,392 + -0.1 919,396 + +0.1 919,412 + +1.1 919,412 + -1.4 919,489 - -1.9 919,539 + MMP_RS04825 0.12 -0.2 919,543 + MMP_RS04825 0.13 -0.7 919,581 + MMP_RS04825 0.17 +0.7 919,595 + MMP_RS04825 0.19 -1.8 919,609 + MMP_RS04825 0.21 -1.0 919,616 + MMP_RS04825 0.22 -0.9 919,616 + MMP_RS04825 0.22 -0.9 919,624 - MMP_RS04825 0.23 -0.6 919,663 - MMP_RS04825 0.28 -4.7 919,663 - MMP_RS04825 0.28 -0.3 919,746 - MMP_RS04825 0.38 -0.2 919,747 + MMP_RS04825 0.38 -0.4 919,750 - MMP_RS04825 0.38 -0.1 919,854 + MMP_RS04825 0.51 -1.5 919,972 - MMP_RS04825 0.66 -0.9 919,980 + MMP_RS04825 0.67 -0.6 920,014 + MMP_RS04825 0.71 -0.8 920,048 - MMP_RS04825 0.75 -1.9 920,048 - MMP_RS04825 0.75 -2.0 920,054 + MMP_RS04825 0.76 -2.6 920,060 + MMP_RS04825 0.76 -1.8 920,101 + MMP_RS04825 0.81 -1.9 920,101 + MMP_RS04825 0.81 -0.8 920,109 - MMP_RS04825 0.82 -2.0 920,109 - MMP_RS04825 0.82 -1.2 920,162 - MMP_RS04825 0.89 -1.1 920,169 - MMP_RS04825 0.90 -0.6 920,169 - MMP_RS04825 0.90 -0.0 920,170 + -0.6 920,170 + -2.1 920,173 - -0.9 920,173 - -0.1 920,173 - -2.8 920,174 + -0.3 920,174 + -1.2 920,174 + -1.5 920,196 + -1.9 920,201 - -0.6 920,225 + -1.9 920,238 - -1.3 920,238 - -1.1 920,242 - -0.1 920,243 + -2.0 920,243 + -0.4 920,243 + +0.5 920,266 - +0.9 920,266 - +0.7 920,266 - +0.2 920,266 - -1.3 920,267 + +1.3 920,267 + +0.4 920,294 + -0.2 920,316 - -1.6 920,319 - +0.7 920,319 - +1.1 920,323 - +0.8 920,358 - -0.8 920,359 + +0.9 920,359 + +0.2 920,359 + -0.9 920,402 - MMP_RS04830 0.13 +0.2 920,402 - MMP_RS04830 0.13 +0.6 920,403 + MMP_RS04830 0.13 +0.0 920,406 - MMP_RS04830 0.14 +0.4 920,406 - MMP_RS04830 0.14 -2.4 920,407 + MMP_RS04830 0.14 -0.1 920,411 - MMP_RS04830 0.15 +0.4 920,429 - MMP_RS04830 0.18 -0.4 920,430 + MMP_RS04830 0.18 -1.6 920,444 - MMP_RS04830 0.20 +1.3 920,478 + MMP_RS04830 0.26 -0.7 920,478 + MMP_RS04830 0.26 +0.3 920,478 + MMP_RS04830 0.26 +0.9 920,480 - MMP_RS04830 0.26 +0.6 920,480 - MMP_RS04830 0.26 -0.3 920,514 - MMP_RS04830 0.32 -0.5 920,515 + MMP_RS04830 0.32 -0.8 920,532 - MMP_RS04830 0.34 +0.5 920,533 + MMP_RS04830 0.35 +0.5 920,547 - MMP_RS04830 0.37 -2.4 920,653 + MMP_RS04830 0.54 -0.3 920,791 - MMP_RS04830 0.77 -0.6 920,791 - MMP_RS04830 0.77 -0.9 920,792 + MMP_RS04830 0.77 -0.3 920,810 - MMP_RS04830 0.80 -0.4 920,819 - MMP_RS04830 0.82 -0.8 920,847 + MMP_RS04830 0.86 +0.5 920,906 - +0.3 920,907 + -0.5 920,910 - -0.7 920,934 + -1.3 920,996 - -0.4 921,005 - -2.6 921,006 + -2.5 921,055 - MMP_RS04835 0.15 -4.0 921,107 - MMP_RS04835 0.23 -0.7 921,107 - MMP_RS04835 0.23 -1.3 921,160 - MMP_RS04835 0.30 -1.3 921,161 + MMP_RS04835 0.30 -2.7 921,167 + MMP_RS04835 0.31 -1.2
Or see this region's nucleotide sequence