Experiment: McCas_H2_complete Nitrofurantoin 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02175 and MMP_RS02180 are separated by 19 nucleotides MMP_RS02180 and MMP_RS02185 are separated by 131 nucleotides
MMP_RS02175: MMP_RS02175 - DUF1611 domain-containing protein, at 406,701 to 407,621
_RS02175
MMP_RS02180: MMP_RS02180 - GMC oxidoreductase, at 407,641 to 408,801
_RS02180
MMP_RS02185: MMP_RS02185 - ribose-phosphate diphosphokinase, at 408,933 to 409,796
_RS02185
Position (kb) 407
408
409 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 406.770 kb on + strand at 406.772 kb on + strand at 406.772 kb on + strand at 407.408 kb on + strand, within MMP_RS02175 at 407.638 kb on + strand at 407.741 kb on - strand at 407.741 kb on - strand at 407.838 kb on - strand at 407.989 kb on - strand at 407.989 kb on - strand at 407.990 kb on + strand at 408.030 kb on - strand at 408.037 kb on - strand at 408.184 kb on + strand at 408.218 kb on + strand at 408.233 kb on + strand at 408.556 kb on - strand at 408.557 kb on + strand at 408.683 kb on - strand at 408.683 kb on - strand at 408.684 kb on + strand at 408.684 kb on + strand at 408.715 kb on - strand at 408.715 kb on - strand at 408.718 kb on + strand at 408.750 kb on - strand at 408.784 kb on - strand at 408.832 kb on + strand at 408.887 kb on - strand at 409.043 kb on + strand at 409.045 kb on + strand at 409.088 kb on + strand at 409.769 kb on + strand at 409.798 kb on - strand at 409.798 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Nitrofurantoin 0.1 mM remove 406,770 + -0.2 406,772 + -0.2 406,772 + -1.3 407,408 + MMP_RS02175 0.77 -5.2 407,638 + +0.2 407,741 - -6.0 407,741 - -2.4 407,838 - -2.9 407,989 - -2.1 407,989 - -2.3 407,990 + -2.8 408,030 - -4.7 408,037 - -2.2 408,184 + -4.2 408,218 + -2.9 408,233 + -2.2 408,556 - -5.4 408,557 + -1.5 408,683 - -4.7 408,683 - -2.1 408,684 + -1.6 408,684 + -4.6 408,715 - -2.9 408,715 - -3.7 408,718 + -2.3 408,750 - -1.1 408,784 - -1.2 408,832 + -1.2 408,887 - -1.4 409,043 + -4.7 409,045 + -3.8 409,088 + -0.5 409,769 + -2.4 409,798 - +0.9 409,798 - -1.1
Or see this region's nucleotide sequence