Strain Fitness in Methanococcus maripaludis S2 around MMP_RS09015

Experiment: McCas_H2_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05130 and MMP_RS09015 are separated by 57 nucleotidesMMP_RS09015 and MMP_RS05135 are separated by 28 nucleotidesMMP_RS05135 and MMP_RS05140 are separated by 118 nucleotidesMMP_RS05140 and MMP_RS05145 overlap by 4 nucleotides MMP_RS05130: MMP_RS05130 - DUF2226 domain-containing protein, at 978,735 to 980,321 _RS05130 MMP_RS09015: MMP_RS09015 - hypothetical protein, at 980,379 to 980,537 _RS09015 MMP_RS05135: MMP_RS05135 - hypothetical protein, at 980,566 to 981,087 _RS05135 MMP_RS05140: MMP_RS05140 - helix-turn-helix transcriptional regulator, at 981,206 to 981,406 _RS05140 MMP_RS05145: MMP_RS05145 - hypothetical protein, at 981,403 to 981,789 _RS05145 Position (kb) 980 981Strain fitness (log2 ratio) -2 -1 0 1 2 3at 979.392 kb on - strand, within MMP_RS05130at 979.427 kb on - strand, within MMP_RS05130at 979.482 kb on - strand, within MMP_RS05130at 979.503 kb on + strand, within MMP_RS05130at 979.513 kb on + strand, within MMP_RS05130at 979.600 kb on - strand, within MMP_RS05130at 979.610 kb on - strand, within MMP_RS05130at 979.611 kb on + strand, within MMP_RS05130at 979.725 kb on + strand, within MMP_RS05130at 979.736 kb on + strand, within MMP_RS05130at 979.765 kb on + strand, within MMP_RS05130at 979.765 kb on + strand, within MMP_RS05130at 979.855 kb on - strand, within MMP_RS05130at 979.867 kb on + strand, within MMP_RS05130at 979.867 kb on + strand, within MMP_RS05130at 979.868 kb on - strand, within MMP_RS05130at 979.868 kb on - strand, within MMP_RS05130at 979.868 kb on - strand, within MMP_RS05130at 979.868 kb on - strand, within MMP_RS05130at 979.868 kb on - strand, within MMP_RS05130at 979.868 kb on - strand, within MMP_RS05130at 979.870 kb on - strand, within MMP_RS05130at 979.871 kb on + strand, within MMP_RS05130at 979.871 kb on + strand, within MMP_RS05130at 979.956 kb on + strand, within MMP_RS05130at 979.958 kb on - strand, within MMP_RS05130at 979.962 kb on - strand, within MMP_RS05130at 979.969 kb on - strand, within MMP_RS05130at 979.969 kb on - strand, within MMP_RS05130at 979.970 kb on + strand, within MMP_RS05130at 980.016 kb on + strand, within MMP_RS05130at 980.065 kb on - strand, within MMP_RS05130at 980.065 kb on - strand, within MMP_RS05130at 980.066 kb on + strand, within MMP_RS05130at 980.066 kb on + strand, within MMP_RS05130at 980.067 kb on - strand, within MMP_RS05130at 980.073 kb on - strand, within MMP_RS05130at 980.073 kb on - strand, within MMP_RS05130at 980.115 kb on + strand, within MMP_RS05130at 980.115 kb on + strand, within MMP_RS05130at 980.140 kb on + strand, within MMP_RS05130at 980.242 kb on - strandat 980.242 kb on - strandat 980.243 kb on + strandat 980.246 kb on - strandat 980.277 kb on + strandat 980.313 kb on - strandat 980.314 kb on + strandat 980.315 kb on - strandat 980.315 kb on - strandat 980.316 kb on + strandat 980.316 kb on + strandat 980.316 kb on + strandat 980.316 kb on + strandat 980.316 kb on + strandat 980.347 kb on - strandat 980.348 kb on + strandat 980.378 kb on - strandat 980.385 kb on + strandat 980.392 kb on + strandat 980.621 kb on + strand, within MMP_RS05135at 980.630 kb on - strand, within MMP_RS05135at 980.660 kb on - strand, within MMP_RS05135at 980.696 kb on - strand, within MMP_RS05135at 980.697 kb on + strand, within MMP_RS05135at 980.805 kb on - strand, within MMP_RS05135at 980.805 kb on - strand, within MMP_RS05135at 980.805 kb on - strand, within MMP_RS05135at 980.879 kb on + strand, within MMP_RS05135at 980.879 kb on + strand, within MMP_RS05135at 980.936 kb on - strand, within MMP_RS05135at 980.953 kb on - strand, within MMP_RS05135at 980.954 kb on + strand, within MMP_RS05135at 980.957 kb on - strand, within MMP_RS05135at 980.957 kb on - strand, within MMP_RS05135at 980.957 kb on - strand, within MMP_RS05135at 980.957 kb on - strand, within MMP_RS05135at 980.957 kb on - strand, within MMP_RS05135at 980.957 kb on - strand, within MMP_RS05135at 980.957 kb on - strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.962 kb on + strand, within MMP_RS05135at 980.962 kb on + strand, within MMP_RS05135at 980.962 kb on + strand, within MMP_RS05135at 980.962 kb on + strand, within MMP_RS05135at 980.962 kb on + strand, within MMP_RS05135at 980.962 kb on + strand, within MMP_RS05135at 980.962 kb on + strand, within MMP_RS05135at 980.962 kb on + strand, within MMP_RS05135at 980.963 kb on - strand, within MMP_RS05135at 980.964 kb on + strand, within MMP_RS05135at 980.996 kb on + strand, within MMP_RS05135at 980.998 kb on + strand, within MMP_RS05135at 981.230 kb on - strand, within MMP_RS05140at 981.239 kb on - strand, within MMP_RS05140at 981.392 kb on - strandat 981.442 kb on - strand, within MMP_RS05145at 981.499 kb on - strand, within MMP_RS05145at 981.513 kb on - strand, within MMP_RS05145at 981.513 kb on - strand, within MMP_RS05145

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM
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979,392 - MMP_RS05130 0.41 -1.0
979,427 - MMP_RS05130 0.44 -2.3
979,482 - MMP_RS05130 0.47 -0.4
979,503 + MMP_RS05130 0.48 -0.3
979,513 + MMP_RS05130 0.49 -0.4
979,600 - MMP_RS05130 0.55 -0.6
979,610 - MMP_RS05130 0.55 -0.7
979,611 + MMP_RS05130 0.55 +0.6
979,725 + MMP_RS05130 0.62 -1.2
979,736 + MMP_RS05130 0.63 -2.0
979,765 + MMP_RS05130 0.65 -1.3
979,765 + MMP_RS05130 0.65 +0.4
979,855 - MMP_RS05130 0.71 -0.1
979,867 + MMP_RS05130 0.71 -1.3
979,867 + MMP_RS05130 0.71 -0.9
979,868 - MMP_RS05130 0.71 -0.9
979,868 - MMP_RS05130 0.71 -0.6
979,868 - MMP_RS05130 0.71 -1.3
979,868 - MMP_RS05130 0.71 -0.7
979,868 - MMP_RS05130 0.71 -0.3
979,868 - MMP_RS05130 0.71 -0.7
979,870 - MMP_RS05130 0.72 -1.0
979,871 + MMP_RS05130 0.72 -0.7
979,871 + MMP_RS05130 0.72 -2.6
979,956 + MMP_RS05130 0.77 +0.6
979,958 - MMP_RS05130 0.77 +1.5
979,962 - MMP_RS05130 0.77 +0.2
979,969 - MMP_RS05130 0.78 +0.3
979,969 - MMP_RS05130 0.78 -0.5
979,970 + MMP_RS05130 0.78 -1.4
980,016 + MMP_RS05130 0.81 -1.8
980,065 - MMP_RS05130 0.84 -0.8
980,065 - MMP_RS05130 0.84 -0.3
980,066 + MMP_RS05130 0.84 -0.2
980,066 + MMP_RS05130 0.84 -1.5
980,067 - MMP_RS05130 0.84 -0.5
980,073 - MMP_RS05130 0.84 -0.3
980,073 - MMP_RS05130 0.84 -0.7
980,115 + MMP_RS05130 0.87 -1.1
980,115 + MMP_RS05130 0.87 -1.1
980,140 + MMP_RS05130 0.89 -0.0
980,242 - -1.8
980,242 - -1.6
980,243 + -0.2
980,246 - +0.1
980,277 + +0.3
980,313 - +1.2
980,314 + +2.8
980,315 - -0.4
980,315 - -0.2
980,316 + -1.4
980,316 + -0.6
980,316 + -1.9
980,316 + -1.2
980,316 + +0.3
980,347 - -1.5
980,348 + -0.1
980,378 - +0.4
980,385 + -0.1
980,392 + +0.4
980,621 + MMP_RS05135 0.11 +0.8
980,630 - MMP_RS05135 0.12 -0.1
980,660 - MMP_RS05135 0.18 -0.1
980,696 - MMP_RS05135 0.25 -1.0
980,697 + MMP_RS05135 0.25 +0.1
980,805 - MMP_RS05135 0.46 -1.0
980,805 - MMP_RS05135 0.46 -1.1
980,805 - MMP_RS05135 0.46 -1.3
980,879 + MMP_RS05135 0.60 +0.6
980,879 + MMP_RS05135 0.60 +0.1
980,936 - MMP_RS05135 0.71 +0.2
980,953 - MMP_RS05135 0.74 -0.7
980,954 + MMP_RS05135 0.74 +0.4
980,957 - MMP_RS05135 0.75 +0.3
980,957 - MMP_RS05135 0.75 -0.6
980,957 - MMP_RS05135 0.75 +0.2
980,957 - MMP_RS05135 0.75 -0.2
980,957 - MMP_RS05135 0.75 -1.9
980,957 - MMP_RS05135 0.75 +0.2
980,957 - MMP_RS05135 0.75 -0.7
980,958 + MMP_RS05135 0.75 +0.8
980,958 + MMP_RS05135 0.75 -0.2
980,958 + MMP_RS05135 0.75 +0.4
980,958 + MMP_RS05135 0.75 -0.2
980,958 + MMP_RS05135 0.75 +1.4
980,958 + MMP_RS05135 0.75 -1.0
980,958 + MMP_RS05135 0.75 +0.3
980,958 + MMP_RS05135 0.75 +1.9
980,958 + MMP_RS05135 0.75 +0.9
980,958 + MMP_RS05135 0.75 +0.4
980,958 + MMP_RS05135 0.75 -2.0
980,958 + MMP_RS05135 0.75 -0.5
980,958 + MMP_RS05135 0.75 -1.7
980,958 + MMP_RS05135 0.75 +0.9
980,959 - MMP_RS05135 0.75 +1.5
980,959 - MMP_RS05135 0.75 +0.7
980,959 - MMP_RS05135 0.75 -1.8
980,959 - MMP_RS05135 0.75 +1.0
980,959 - MMP_RS05135 0.75 +1.5
980,959 - MMP_RS05135 0.75 +0.8
980,959 - MMP_RS05135 0.75 -0.6
980,959 - MMP_RS05135 0.75 -1.4
980,959 - MMP_RS05135 0.75 +0.3
980,959 - MMP_RS05135 0.75 -0.5
980,960 + MMP_RS05135 0.75 -0.8
980,960 + MMP_RS05135 0.75 -0.5
980,960 + MMP_RS05135 0.75 -0.6
980,960 + MMP_RS05135 0.75 +0.0
980,960 + MMP_RS05135 0.75 -1.5
980,960 + MMP_RS05135 0.75 +0.5
980,960 + MMP_RS05135 0.75 -1.8
980,960 + MMP_RS05135 0.75 +0.3
980,960 + MMP_RS05135 0.75 -0.6
980,960 + MMP_RS05135 0.75 +1.8
980,960 + MMP_RS05135 0.75 +1.2
980,960 + MMP_RS05135 0.75 -0.3
980,960 + MMP_RS05135 0.75 -0.8
980,960 + MMP_RS05135 0.75 +0.2
980,960 + MMP_RS05135 0.75 -0.8
980,960 + MMP_RS05135 0.75 +0.2
980,960 + MMP_RS05135 0.75 +0.1
980,960 + MMP_RS05135 0.75 -0.8
980,961 - MMP_RS05135 0.76 -0.1
980,961 - MMP_RS05135 0.76 -0.6
980,961 - MMP_RS05135 0.76 -1.5
980,961 - MMP_RS05135 0.76 +0.2
980,961 - MMP_RS05135 0.76 +0.8
980,961 - MMP_RS05135 0.76 +0.3
980,961 - MMP_RS05135 0.76 -0.0
980,961 - MMP_RS05135 0.76 -0.0
980,961 - MMP_RS05135 0.76 +0.6
980,961 - MMP_RS05135 0.76 -0.2
980,962 + MMP_RS05135 0.76 -0.8
980,962 + MMP_RS05135 0.76 +0.2
980,962 + MMP_RS05135 0.76 +0.1
980,962 + MMP_RS05135 0.76 +0.2
980,962 + MMP_RS05135 0.76 +0.1
980,962 + MMP_RS05135 0.76 -0.6
980,962 + MMP_RS05135 0.76 +0.8
980,962 + MMP_RS05135 0.76 -0.4
980,963 - MMP_RS05135 0.76 +2.7
980,964 + MMP_RS05135 0.76 +0.5
980,996 + MMP_RS05135 0.82 +1.5
980,998 + MMP_RS05135 0.83 +0.3
981,230 - MMP_RS05140 0.12 +1.2
981,239 - MMP_RS05140 0.16 +1.9
981,392 - -1.3
981,442 - MMP_RS05145 0.10 +0.3
981,499 - MMP_RS05145 0.25 +0.9
981,513 - MMP_RS05145 0.28 +1.9
981,513 - MMP_RS05145 0.28 -0.4

Or see this region's nucleotide sequence