Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS05155 and MMP_RS05160 are separated by 231 nucleotides MMP_RS05160 and MMP_RS05165 are separated by 297 nucleotides MMP_RS05165 and MMP_RS05170 are separated by 84 nucleotides MMP_RS05170 and MMP_RS05175 overlap by 4 nucleotides
MMP_RS05155: MMP_RS05155 - hypothetical protein, at 982,388 to 982,651
_RS05155
MMP_RS05160: MMP_RS05160 - cupredoxin family copper-binding protein, at 982,883 to 983,239
_RS05160
MMP_RS05165: MMP_RS05165 - right-handed parallel beta-helix repeat-containing protein, at 983,537 to 984,193
_RS05165
MMP_RS05170: MMP_RS05170 - lysine exporter LysO family protein, at 984,278 to 984,865
_RS05170
MMP_RS05175: MMP_RS05175 - hypothetical protein, at 984,862 to 985,110
_RS05175
Position (kb) 983
984
985 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 982.611 kb on + strand, within MMP_RS05155 at 982.611 kb on + strand, within MMP_RS05155 at 982.611 kb on + strand, within MMP_RS05155 at 982.666 kb on - strand at 982.667 kb on + strand at 982.667 kb on + strand at 982.727 kb on + strand at 982.773 kb on + strand at 982.830 kb on - strand at 982.852 kb on - strand at 982.874 kb on + strand at 982.914 kb on - strand at 982.915 kb on + strand at 982.928 kb on + strand, within MMP_RS05160 at 982.928 kb on + strand, within MMP_RS05160 at 982.928 kb on + strand, within MMP_RS05160 at 982.932 kb on - strand, within MMP_RS05160 at 982.936 kb on + strand, within MMP_RS05160 at 982.940 kb on + strand, within MMP_RS05160 at 982.940 kb on + strand, within MMP_RS05160 at 982.941 kb on - strand, within MMP_RS05160 at 982.942 kb on + strand, within MMP_RS05160 at 982.942 kb on + strand, within MMP_RS05160 at 982.942 kb on + strand, within MMP_RS05160 at 982.949 kb on - strand, within MMP_RS05160 at 982.963 kb on - strand, within MMP_RS05160 at 982.964 kb on + strand, within MMP_RS05160 at 983.007 kb on + strand, within MMP_RS05160 at 983.024 kb on - strand, within MMP_RS05160 at 983.024 kb on - strand, within MMP_RS05160 at 983.156 kb on + strand, within MMP_RS05160 at 983.217 kb on + strand at 983.219 kb on - strand at 983.220 kb on + strand at 983.220 kb on + strand at 983.265 kb on + strand at 983.265 kb on + strand at 983.285 kb on - strand at 983.291 kb on - strand at 983.313 kb on - strand at 983.314 kb on + strand at 983.319 kb on + strand at 983.324 kb on + strand at 983.341 kb on - strand at 983.342 kb on + strand at 983.412 kb on - strand at 983.583 kb on - strand at 983.595 kb on - strand at 983.646 kb on - strand, within MMP_RS05165 at 983.646 kb on - strand, within MMP_RS05165 at 983.646 kb on - strand, within MMP_RS05165 at 983.646 kb on - strand, within MMP_RS05165 at 983.647 kb on + strand, within MMP_RS05165 at 983.686 kb on - strand, within MMP_RS05165 at 983.686 kb on - strand, within MMP_RS05165 at 983.698 kb on + strand, within MMP_RS05165 at 983.698 kb on + strand, within MMP_RS05165 at 983.700 kb on - strand, within MMP_RS05165 at 983.701 kb on + strand, within MMP_RS05165 at 983.717 kb on - strand, within MMP_RS05165 at 983.754 kb on - strand, within MMP_RS05165 at 983.798 kb on + strand, within MMP_RS05165 at 983.801 kb on + strand, within MMP_RS05165 at 983.804 kb on + strand, within MMP_RS05165 at 983.826 kb on - strand, within MMP_RS05165 at 983.844 kb on - strand, within MMP_RS05165 at 983.977 kb on + strand, within MMP_RS05165 at 983.988 kb on - strand, within MMP_RS05165 at 983.990 kb on - strand, within MMP_RS05165 at 983.990 kb on - strand, within MMP_RS05165 at 983.991 kb on + strand, within MMP_RS05165 at 984.011 kb on - strand, within MMP_RS05165 at 984.011 kb on - strand, within MMP_RS05165 at 984.012 kb on + strand, within MMP_RS05165 at 984.012 kb on + strand, within MMP_RS05165 at 984.012 kb on + strand, within MMP_RS05165 at 984.012 kb on + strand, within MMP_RS05165 at 984.015 kb on - strand, within MMP_RS05165 at 984.015 kb on - strand, within MMP_RS05165 at 984.015 kb on - strand, within MMP_RS05165 at 984.015 kb on - strand, within MMP_RS05165 at 984.016 kb on + strand, within MMP_RS05165 at 984.016 kb on + strand, within MMP_RS05165 at 984.016 kb on + strand, within MMP_RS05165 at 984.017 kb on - strand, within MMP_RS05165 at 984.020 kb on + strand, within MMP_RS05165 at 984.020 kb on + strand, within MMP_RS05165 at 984.083 kb on - strand, within MMP_RS05165 at 984.084 kb on + strand, within MMP_RS05165 at 984.093 kb on - strand, within MMP_RS05165 at 984.093 kb on - strand, within MMP_RS05165 at 984.159 kb on - strand at 984.160 kb on + strand at 984.272 kb on - strand at 984.362 kb on - strand, within MMP_RS05170 at 984.478 kb on - strand, within MMP_RS05170 at 984.479 kb on + strand, within MMP_RS05170 at 984.479 kb on + strand, within MMP_RS05170 at 984.540 kb on - strand, within MMP_RS05170 at 984.667 kb on - strand, within MMP_RS05170 at 984.667 kb on - strand, within MMP_RS05170 at 984.766 kb on + strand, within MMP_RS05170 at 984.766 kb on + strand, within MMP_RS05170 at 984.805 kb on - strand, within MMP_RS05170 at 984.820 kb on - strand at 984.821 kb on + strand at 984.873 kb on - strand at 984.906 kb on - strand, within MMP_RS05175 at 984.914 kb on + strand, within MMP_RS05175 at 984.940 kb on - strand, within MMP_RS05175 at 984.941 kb on + strand, within MMP_RS05175 at 984.941 kb on + strand, within MMP_RS05175 at 985.079 kb on + strand, within MMP_RS05175 at 985.096 kb on + strand at 985.097 kb on - strand at 985.098 kb on + strand at 985.098 kb on + strand at 985.110 kb on - strand at 985.142 kb on - strand at 985.158 kb on + strand at 985.159 kb on - strand at 985.162 kb on - strand at 985.162 kb on - strand at 985.164 kb on - strand at 985.165 kb on + strand at 985.165 kb on + strand at 985.166 kb on - strand at 985.167 kb on + strand at 985.175 kb on + strand at 985.175 kb on + strand at 985.186 kb on - strand at 985.187 kb on + strand at 985.189 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 982,611 + MMP_RS05155 0.84 -0.3 982,611 + MMP_RS05155 0.84 +1.4 982,611 + MMP_RS05155 0.84 +1.4 982,666 - +0.2 982,667 + -1.2 982,667 + -1.0 982,727 + -0.5 982,773 + +1.0 982,830 - +1.1 982,852 - +0.1 982,874 + -0.5 982,914 - +1.6 982,915 + +2.0 982,928 + MMP_RS05160 0.13 +1.4 982,928 + MMP_RS05160 0.13 -0.4 982,928 + MMP_RS05160 0.13 -0.1 982,932 - MMP_RS05160 0.14 -1.2 982,936 + MMP_RS05160 0.15 +0.2 982,940 + MMP_RS05160 0.16 -1.6 982,940 + MMP_RS05160 0.16 -1.9 982,941 - MMP_RS05160 0.16 +0.8 982,942 + MMP_RS05160 0.17 +0.8 982,942 + MMP_RS05160 0.17 -0.9 982,942 + MMP_RS05160 0.17 -0.1 982,949 - MMP_RS05160 0.18 +0.7 982,963 - MMP_RS05160 0.22 -0.3 982,964 + MMP_RS05160 0.23 +0.8 983,007 + MMP_RS05160 0.35 -0.8 983,024 - MMP_RS05160 0.39 +0.1 983,024 - MMP_RS05160 0.39 +0.1 983,156 + MMP_RS05160 0.76 -1.7 983,217 + +3.9 983,219 - +0.2 983,220 + -0.4 983,220 + +1.8 983,265 + +0.1 983,265 + -0.5 983,285 - +0.1 983,291 - -1.1 983,313 - +1.1 983,314 + -0.5 983,319 + -0.4 983,324 + +0.1 983,341 - +0.5 983,342 + +0.4 983,412 - -0.3 983,583 - +2.7 983,595 - +0.2 983,646 - MMP_RS05165 0.17 +0.6 983,646 - MMP_RS05165 0.17 -1.0 983,646 - MMP_RS05165 0.17 +0.5 983,646 - MMP_RS05165 0.17 +0.4 983,647 + MMP_RS05165 0.17 -0.7 983,686 - MMP_RS05165 0.23 +1.6 983,686 - MMP_RS05165 0.23 -1.7 983,698 + MMP_RS05165 0.25 -1.1 983,698 + MMP_RS05165 0.25 -0.7 983,700 - MMP_RS05165 0.25 +0.5 983,701 + MMP_RS05165 0.25 -0.5 983,717 - MMP_RS05165 0.27 -1.0 983,754 - MMP_RS05165 0.33 -1.0 983,798 + MMP_RS05165 0.40 +0.4 983,801 + MMP_RS05165 0.40 +1.2 983,804 + MMP_RS05165 0.41 +1.4 983,826 - MMP_RS05165 0.44 -0.7 983,844 - MMP_RS05165 0.47 +0.7 983,977 + MMP_RS05165 0.67 +0.3 983,988 - MMP_RS05165 0.69 +1.2 983,990 - MMP_RS05165 0.69 -0.2 983,990 - MMP_RS05165 0.69 +0.8 983,991 + MMP_RS05165 0.69 -0.0 984,011 - MMP_RS05165 0.72 -0.8 984,011 - MMP_RS05165 0.72 -0.3 984,012 + MMP_RS05165 0.72 +1.2 984,012 + MMP_RS05165 0.72 +0.6 984,012 + MMP_RS05165 0.72 -0.2 984,012 + MMP_RS05165 0.72 -0.6 984,015 - MMP_RS05165 0.73 -0.5 984,015 - MMP_RS05165 0.73 -0.5 984,015 - MMP_RS05165 0.73 -2.5 984,015 - MMP_RS05165 0.73 -0.5 984,016 + MMP_RS05165 0.73 -1.2 984,016 + MMP_RS05165 0.73 +0.0 984,016 + MMP_RS05165 0.73 +0.6 984,017 - MMP_RS05165 0.73 -0.0 984,020 + MMP_RS05165 0.74 -1.4 984,020 + MMP_RS05165 0.74 +3.6 984,083 - MMP_RS05165 0.83 +0.4 984,084 + MMP_RS05165 0.83 -1.1 984,093 - MMP_RS05165 0.85 +1.1 984,093 - MMP_RS05165 0.85 -2.1 984,159 - +0.1 984,160 + -0.3 984,272 - +1.0 984,362 - MMP_RS05170 0.14 -0.5 984,478 - MMP_RS05170 0.34 +1.7 984,479 + MMP_RS05170 0.34 -0.5 984,479 + MMP_RS05170 0.34 +1.3 984,540 - MMP_RS05170 0.45 +1.3 984,667 - MMP_RS05170 0.66 +0.1 984,667 - MMP_RS05170 0.66 +0.7 984,766 + MMP_RS05170 0.83 +2.1 984,766 + MMP_RS05170 0.83 +0.8 984,805 - MMP_RS05170 0.90 +0.1 984,820 - +0.0 984,821 + -0.4 984,873 - +0.7 984,906 - MMP_RS05175 0.18 -0.6 984,914 + MMP_RS05175 0.21 +0.8 984,940 - MMP_RS05175 0.31 +0.5 984,941 + MMP_RS05175 0.32 -0.8 984,941 + MMP_RS05175 0.32 +0.4 985,079 + MMP_RS05175 0.87 +0.1 985,096 + +2.1 985,097 - -0.6 985,098 + +0.5 985,098 + +1.4 985,110 - -0.8 985,142 - +0.1 985,158 + -0.7 985,159 - -0.2 985,162 - +0.9 985,162 - -0.6 985,164 - +0.2 985,165 + -0.2 985,165 + +0.6 985,166 - +0.0 985,167 + +0.4 985,175 + -0.9 985,175 + -0.6 985,186 - +0.3 985,187 + +0.3 985,189 + +1.4
Or see this region's nucleotide sequence