Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05160

Experiment: McCas_H2_complete Antimycin A 0.01 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS05150 and MMP_RS05155 are separated by 157 nucleotidesMMP_RS05155 and MMP_RS05160 are separated by 231 nucleotidesMMP_RS05160 and MMP_RS05165 are separated by 297 nucleotides MMP_RS05150: MMP_RS05150 - hypothetical protein, at 981,799 to 982,230 _RS05150 MMP_RS05155: MMP_RS05155 - hypothetical protein, at 982,388 to 982,651 _RS05155 MMP_RS05160: MMP_RS05160 - cupredoxin family copper-binding protein, at 982,883 to 983,239 _RS05160 MMP_RS05165: MMP_RS05165 - right-handed parallel beta-helix repeat-containing protein, at 983,537 to 984,193 _RS05165 Position (kb) 982 983 984Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 981.887 kb on - strand, within MMP_RS05150at 981.888 kb on + strand, within MMP_RS05150at 981.924 kb on + strand, within MMP_RS05150at 981.989 kb on + strand, within MMP_RS05150at 981.991 kb on - strand, within MMP_RS05150at 981.991 kb on - strand, within MMP_RS05150at 982.124 kb on - strand, within MMP_RS05150at 982.125 kb on + strand, within MMP_RS05150at 982.316 kb on - strandat 982.360 kb on - strandat 982.435 kb on + strand, within MMP_RS05155at 982.435 kb on + strand, within MMP_RS05155at 982.502 kb on - strand, within MMP_RS05155at 982.502 kb on - strand, within MMP_RS05155at 982.503 kb on + strand, within MMP_RS05155at 982.611 kb on + strand, within MMP_RS05155at 982.611 kb on + strand, within MMP_RS05155at 982.611 kb on + strand, within MMP_RS05155at 982.666 kb on - strandat 982.667 kb on + strandat 982.667 kb on + strandat 982.727 kb on + strandat 982.773 kb on + strandat 982.830 kb on - strandat 982.852 kb on - strandat 982.874 kb on + strandat 982.914 kb on - strandat 982.915 kb on + strandat 982.928 kb on + strand, within MMP_RS05160at 982.928 kb on + strand, within MMP_RS05160at 982.928 kb on + strand, within MMP_RS05160at 982.932 kb on - strand, within MMP_RS05160at 982.936 kb on + strand, within MMP_RS05160at 982.940 kb on + strand, within MMP_RS05160at 982.940 kb on + strand, within MMP_RS05160at 982.941 kb on - strand, within MMP_RS05160at 982.942 kb on + strand, within MMP_RS05160at 982.942 kb on + strand, within MMP_RS05160at 982.942 kb on + strand, within MMP_RS05160at 982.949 kb on - strand, within MMP_RS05160at 982.963 kb on - strand, within MMP_RS05160at 982.964 kb on + strand, within MMP_RS05160at 983.007 kb on + strand, within MMP_RS05160at 983.024 kb on - strand, within MMP_RS05160at 983.024 kb on - strand, within MMP_RS05160at 983.156 kb on + strand, within MMP_RS05160at 983.217 kb on + strandat 983.219 kb on - strandat 983.220 kb on + strandat 983.220 kb on + strandat 983.265 kb on + strandat 983.265 kb on + strandat 983.285 kb on - strandat 983.291 kb on - strandat 983.313 kb on - strandat 983.314 kb on + strandat 983.319 kb on + strandat 983.324 kb on + strandat 983.341 kb on - strandat 983.342 kb on + strandat 983.412 kb on - strandat 983.583 kb on - strandat 983.595 kb on - strandat 983.646 kb on - strand, within MMP_RS05165at 983.646 kb on - strand, within MMP_RS05165at 983.646 kb on - strand, within MMP_RS05165at 983.646 kb on - strand, within MMP_RS05165at 983.647 kb on + strand, within MMP_RS05165at 983.686 kb on - strand, within MMP_RS05165at 983.686 kb on - strand, within MMP_RS05165at 983.698 kb on + strand, within MMP_RS05165at 983.698 kb on + strand, within MMP_RS05165at 983.700 kb on - strand, within MMP_RS05165at 983.701 kb on + strand, within MMP_RS05165at 983.717 kb on - strand, within MMP_RS05165at 983.754 kb on - strand, within MMP_RS05165at 983.798 kb on + strand, within MMP_RS05165at 983.801 kb on + strand, within MMP_RS05165at 983.804 kb on + strand, within MMP_RS05165at 983.826 kb on - strand, within MMP_RS05165at 983.844 kb on - strand, within MMP_RS05165at 983.977 kb on + strand, within MMP_RS05165at 983.988 kb on - strand, within MMP_RS05165at 983.990 kb on - strand, within MMP_RS05165at 983.990 kb on - strand, within MMP_RS05165at 983.991 kb on + strand, within MMP_RS05165at 984.011 kb on - strand, within MMP_RS05165at 984.011 kb on - strand, within MMP_RS05165at 984.012 kb on + strand, within MMP_RS05165at 984.012 kb on + strand, within MMP_RS05165at 984.012 kb on + strand, within MMP_RS05165at 984.012 kb on + strand, within MMP_RS05165at 984.015 kb on - strand, within MMP_RS05165at 984.015 kb on - strand, within MMP_RS05165at 984.015 kb on - strand, within MMP_RS05165at 984.015 kb on - strand, within MMP_RS05165at 984.016 kb on + strand, within MMP_RS05165at 984.016 kb on + strand, within MMP_RS05165at 984.016 kb on + strand, within MMP_RS05165at 984.017 kb on - strand, within MMP_RS05165at 984.020 kb on + strand, within MMP_RS05165at 984.020 kb on + strand, within MMP_RS05165at 984.083 kb on - strand, within MMP_RS05165at 984.084 kb on + strand, within MMP_RS05165at 984.093 kb on - strand, within MMP_RS05165at 984.093 kb on - strand, within MMP_RS05165at 984.159 kb on - strandat 984.160 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM
remove
981,887 - MMP_RS05150 0.20 -0.3
981,888 + MMP_RS05150 0.21 -0.1
981,924 + MMP_RS05150 0.29 -0.6
981,989 + MMP_RS05150 0.44 -0.2
981,991 - MMP_RS05150 0.44 +1.2
981,991 - MMP_RS05150 0.44 +2.3
982,124 - MMP_RS05150 0.75 -0.1
982,125 + MMP_RS05150 0.75 +0.9
982,316 - +1.1
982,360 - -0.2
982,435 + MMP_RS05155 0.18 +2.7
982,435 + MMP_RS05155 0.18 -0.2
982,502 - MMP_RS05155 0.43 -0.7
982,502 - MMP_RS05155 0.43 -0.1
982,503 + MMP_RS05155 0.44 +0.3
982,611 + MMP_RS05155 0.84 -0.3
982,611 + MMP_RS05155 0.84 +1.4
982,611 + MMP_RS05155 0.84 +1.4
982,666 - +0.2
982,667 + -1.2
982,667 + -1.0
982,727 + -0.5
982,773 + +1.0
982,830 - +1.1
982,852 - +0.1
982,874 + -0.5
982,914 - +1.6
982,915 + +2.0
982,928 + MMP_RS05160 0.13 +1.4
982,928 + MMP_RS05160 0.13 -0.4
982,928 + MMP_RS05160 0.13 -0.1
982,932 - MMP_RS05160 0.14 -1.2
982,936 + MMP_RS05160 0.15 +0.2
982,940 + MMP_RS05160 0.16 -1.6
982,940 + MMP_RS05160 0.16 -1.9
982,941 - MMP_RS05160 0.16 +0.8
982,942 + MMP_RS05160 0.17 +0.8
982,942 + MMP_RS05160 0.17 -0.9
982,942 + MMP_RS05160 0.17 -0.1
982,949 - MMP_RS05160 0.18 +0.7
982,963 - MMP_RS05160 0.22 -0.3
982,964 + MMP_RS05160 0.23 +0.8
983,007 + MMP_RS05160 0.35 -0.8
983,024 - MMP_RS05160 0.39 +0.1
983,024 - MMP_RS05160 0.39 +0.1
983,156 + MMP_RS05160 0.76 -1.7
983,217 + +3.9
983,219 - +0.2
983,220 + -0.4
983,220 + +1.8
983,265 + +0.1
983,265 + -0.5
983,285 - +0.1
983,291 - -1.1
983,313 - +1.1
983,314 + -0.5
983,319 + -0.4
983,324 + +0.1
983,341 - +0.5
983,342 + +0.4
983,412 - -0.3
983,583 - +2.7
983,595 - +0.2
983,646 - MMP_RS05165 0.17 +0.6
983,646 - MMP_RS05165 0.17 -1.0
983,646 - MMP_RS05165 0.17 +0.5
983,646 - MMP_RS05165 0.17 +0.4
983,647 + MMP_RS05165 0.17 -0.7
983,686 - MMP_RS05165 0.23 +1.6
983,686 - MMP_RS05165 0.23 -1.7
983,698 + MMP_RS05165 0.25 -1.1
983,698 + MMP_RS05165 0.25 -0.7
983,700 - MMP_RS05165 0.25 +0.5
983,701 + MMP_RS05165 0.25 -0.5
983,717 - MMP_RS05165 0.27 -1.0
983,754 - MMP_RS05165 0.33 -1.0
983,798 + MMP_RS05165 0.40 +0.4
983,801 + MMP_RS05165 0.40 +1.2
983,804 + MMP_RS05165 0.41 +1.4
983,826 - MMP_RS05165 0.44 -0.7
983,844 - MMP_RS05165 0.47 +0.7
983,977 + MMP_RS05165 0.67 +0.3
983,988 - MMP_RS05165 0.69 +1.2
983,990 - MMP_RS05165 0.69 -0.2
983,990 - MMP_RS05165 0.69 +0.8
983,991 + MMP_RS05165 0.69 -0.0
984,011 - MMP_RS05165 0.72 -0.8
984,011 - MMP_RS05165 0.72 -0.3
984,012 + MMP_RS05165 0.72 +1.2
984,012 + MMP_RS05165 0.72 +0.6
984,012 + MMP_RS05165 0.72 -0.2
984,012 + MMP_RS05165 0.72 -0.6
984,015 - MMP_RS05165 0.73 -0.5
984,015 - MMP_RS05165 0.73 -0.5
984,015 - MMP_RS05165 0.73 -2.5
984,015 - MMP_RS05165 0.73 -0.5
984,016 + MMP_RS05165 0.73 -1.2
984,016 + MMP_RS05165 0.73 +0.0
984,016 + MMP_RS05165 0.73 +0.6
984,017 - MMP_RS05165 0.73 -0.0
984,020 + MMP_RS05165 0.74 -1.4
984,020 + MMP_RS05165 0.74 +3.6
984,083 - MMP_RS05165 0.83 +0.4
984,084 + MMP_RS05165 0.83 -1.1
984,093 - MMP_RS05165 0.85 +1.1
984,093 - MMP_RS05165 0.85 -2.1
984,159 - +0.1
984,160 + -0.3

Or see this region's nucleotide sequence