Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS05140 and MMP_RS05145 overlap by 4 nucleotides MMP_RS05145 and MMP_RS05150 are separated by 9 nucleotides MMP_RS05150 and MMP_RS05155 are separated by 157 nucleotides MMP_RS05155 and MMP_RS05160 are separated by 231 nucleotides MMP_RS05160 and MMP_RS05165 are separated by 297 nucleotides
MMP_RS05140: MMP_RS05140 - helix-turn-helix transcriptional regulator, at 981,206 to 981,406
_RS05140
MMP_RS05145: MMP_RS05145 - hypothetical protein, at 981,403 to 981,789
_RS05145
MMP_RS05150: MMP_RS05150 - hypothetical protein, at 981,799 to 982,230
_RS05150
MMP_RS05155: MMP_RS05155 - hypothetical protein, at 982,388 to 982,651
_RS05155
MMP_RS05160: MMP_RS05160 - cupredoxin family copper-binding protein, at 982,883 to 983,239
_RS05160
MMP_RS05165: MMP_RS05165 - right-handed parallel beta-helix repeat-containing protein, at 983,537 to 984,193
_RS05165
Position (kb) 982
983 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 981.392 kb on - strand at 981.442 kb on - strand, within MMP_RS05145 at 981.499 kb on - strand, within MMP_RS05145 at 981.513 kb on - strand, within MMP_RS05145 at 981.513 kb on - strand, within MMP_RS05145 at 981.569 kb on - strand, within MMP_RS05145 at 981.582 kb on - strand, within MMP_RS05145 at 981.634 kb on - strand, within MMP_RS05145 at 981.635 kb on + strand, within MMP_RS05145 at 981.635 kb on + strand, within MMP_RS05145 at 981.635 kb on + strand, within MMP_RS05145 at 981.635 kb on + strand, within MMP_RS05145 at 981.652 kb on + strand, within MMP_RS05145 at 981.652 kb on + strand, within MMP_RS05145 at 981.653 kb on - strand, within MMP_RS05145 at 981.653 kb on - strand, within MMP_RS05145 at 981.655 kb on - strand, within MMP_RS05145 at 981.655 kb on - strand, within MMP_RS05145 at 981.655 kb on - strand, within MMP_RS05145 at 981.655 kb on - strand, within MMP_RS05145 at 981.656 kb on + strand, within MMP_RS05145 at 981.656 kb on + strand, within MMP_RS05145 at 981.656 kb on + strand, within MMP_RS05145 at 981.659 kb on + strand, within MMP_RS05145 at 981.679 kb on - strand, within MMP_RS05145 at 981.694 kb on - strand, within MMP_RS05145 at 981.695 kb on + strand, within MMP_RS05145 at 981.719 kb on - strand, within MMP_RS05145 at 981.749 kb on + strand, within MMP_RS05145 at 981.825 kb on + strand at 981.842 kb on + strand at 981.871 kb on - strand, within MMP_RS05150 at 981.871 kb on - strand, within MMP_RS05150 at 981.887 kb on - strand, within MMP_RS05150 at 981.888 kb on + strand, within MMP_RS05150 at 981.924 kb on + strand, within MMP_RS05150 at 981.989 kb on + strand, within MMP_RS05150 at 981.991 kb on - strand, within MMP_RS05150 at 981.991 kb on - strand, within MMP_RS05150 at 982.124 kb on - strand, within MMP_RS05150 at 982.125 kb on + strand, within MMP_RS05150 at 982.316 kb on - strand at 982.360 kb on - strand at 982.435 kb on + strand, within MMP_RS05155 at 982.435 kb on + strand, within MMP_RS05155 at 982.502 kb on - strand, within MMP_RS05155 at 982.502 kb on - strand, within MMP_RS05155 at 982.503 kb on + strand, within MMP_RS05155 at 982.611 kb on + strand, within MMP_RS05155 at 982.611 kb on + strand, within MMP_RS05155 at 982.611 kb on + strand, within MMP_RS05155 at 982.666 kb on - strand at 982.667 kb on + strand at 982.667 kb on + strand at 982.727 kb on + strand at 982.773 kb on + strand at 982.830 kb on - strand at 982.852 kb on - strand at 982.874 kb on + strand at 982.914 kb on - strand at 982.915 kb on + strand at 982.928 kb on + strand, within MMP_RS05160 at 982.928 kb on + strand, within MMP_RS05160 at 982.928 kb on + strand, within MMP_RS05160 at 982.932 kb on - strand, within MMP_RS05160 at 982.936 kb on + strand, within MMP_RS05160 at 982.940 kb on + strand, within MMP_RS05160 at 982.940 kb on + strand, within MMP_RS05160 at 982.941 kb on - strand, within MMP_RS05160 at 982.942 kb on + strand, within MMP_RS05160 at 982.942 kb on + strand, within MMP_RS05160 at 982.942 kb on + strand, within MMP_RS05160 at 982.949 kb on - strand, within MMP_RS05160 at 982.963 kb on - strand, within MMP_RS05160 at 982.964 kb on + strand, within MMP_RS05160 at 983.007 kb on + strand, within MMP_RS05160 at 983.024 kb on - strand, within MMP_RS05160 at 983.024 kb on - strand, within MMP_RS05160 at 983.156 kb on + strand, within MMP_RS05160 at 983.217 kb on + strand at 983.219 kb on - strand at 983.220 kb on + strand at 983.220 kb on + strand at 983.265 kb on + strand at 983.265 kb on + strand at 983.285 kb on - strand at 983.291 kb on - strand at 983.313 kb on - strand at 983.314 kb on + strand at 983.319 kb on + strand at 983.324 kb on + strand at 983.341 kb on - strand at 983.342 kb on + strand at 983.412 kb on - strand at 983.583 kb on - strand at 983.595 kb on - strand at 983.646 kb on - strand, within MMP_RS05165 at 983.646 kb on - strand, within MMP_RS05165 at 983.646 kb on - strand, within MMP_RS05165 at 983.646 kb on - strand, within MMP_RS05165 at 983.647 kb on + strand, within MMP_RS05165
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 981,392 - -1.3 981,442 - MMP_RS05145 0.10 +0.3 981,499 - MMP_RS05145 0.25 +0.9 981,513 - MMP_RS05145 0.28 +1.9 981,513 - MMP_RS05145 0.28 -0.4 981,569 - MMP_RS05145 0.43 -0.8 981,582 - MMP_RS05145 0.46 -0.3 981,634 - MMP_RS05145 0.60 -1.5 981,635 + MMP_RS05145 0.60 -0.6 981,635 + MMP_RS05145 0.60 +2.1 981,635 + MMP_RS05145 0.60 +0.1 981,635 + MMP_RS05145 0.60 +2.3 981,652 + MMP_RS05145 0.64 -1.3 981,652 + MMP_RS05145 0.64 +2.3 981,653 - MMP_RS05145 0.65 -0.4 981,653 - MMP_RS05145 0.65 +0.5 981,655 - MMP_RS05145 0.65 -1.2 981,655 - MMP_RS05145 0.65 -0.4 981,655 - MMP_RS05145 0.65 -1.2 981,655 - MMP_RS05145 0.65 +0.6 981,656 + MMP_RS05145 0.65 -0.2 981,656 + MMP_RS05145 0.65 -0.9 981,656 + MMP_RS05145 0.65 -0.4 981,659 + MMP_RS05145 0.66 +0.4 981,679 - MMP_RS05145 0.71 -0.4 981,694 - MMP_RS05145 0.75 +0.6 981,695 + MMP_RS05145 0.75 +0.6 981,719 - MMP_RS05145 0.82 -0.6 981,749 + MMP_RS05145 0.89 +4.5 981,825 + -0.2 981,842 + -1.4 981,871 - MMP_RS05150 0.17 +1.0 981,871 - MMP_RS05150 0.17 -0.3 981,887 - MMP_RS05150 0.20 -0.3 981,888 + MMP_RS05150 0.21 -0.1 981,924 + MMP_RS05150 0.29 -0.6 981,989 + MMP_RS05150 0.44 -0.2 981,991 - MMP_RS05150 0.44 +1.2 981,991 - MMP_RS05150 0.44 +2.3 982,124 - MMP_RS05150 0.75 -0.1 982,125 + MMP_RS05150 0.75 +0.9 982,316 - +1.1 982,360 - -0.2 982,435 + MMP_RS05155 0.18 +2.7 982,435 + MMP_RS05155 0.18 -0.2 982,502 - MMP_RS05155 0.43 -0.7 982,502 - MMP_RS05155 0.43 -0.1 982,503 + MMP_RS05155 0.44 +0.3 982,611 + MMP_RS05155 0.84 -0.3 982,611 + MMP_RS05155 0.84 +1.4 982,611 + MMP_RS05155 0.84 +1.4 982,666 - +0.2 982,667 + -1.2 982,667 + -1.0 982,727 + -0.5 982,773 + +1.0 982,830 - +1.1 982,852 - +0.1 982,874 + -0.5 982,914 - +1.6 982,915 + +2.0 982,928 + MMP_RS05160 0.13 +1.4 982,928 + MMP_RS05160 0.13 -0.4 982,928 + MMP_RS05160 0.13 -0.1 982,932 - MMP_RS05160 0.14 -1.2 982,936 + MMP_RS05160 0.15 +0.2 982,940 + MMP_RS05160 0.16 -1.6 982,940 + MMP_RS05160 0.16 -1.9 982,941 - MMP_RS05160 0.16 +0.8 982,942 + MMP_RS05160 0.17 +0.8 982,942 + MMP_RS05160 0.17 -0.9 982,942 + MMP_RS05160 0.17 -0.1 982,949 - MMP_RS05160 0.18 +0.7 982,963 - MMP_RS05160 0.22 -0.3 982,964 + MMP_RS05160 0.23 +0.8 983,007 + MMP_RS05160 0.35 -0.8 983,024 - MMP_RS05160 0.39 +0.1 983,024 - MMP_RS05160 0.39 +0.1 983,156 + MMP_RS05160 0.76 -1.7 983,217 + +3.9 983,219 - +0.2 983,220 + -0.4 983,220 + +1.8 983,265 + +0.1 983,265 + -0.5 983,285 - +0.1 983,291 - -1.1 983,313 - +1.1 983,314 + -0.5 983,319 + -0.4 983,324 + +0.1 983,341 - +0.5 983,342 + +0.4 983,412 - -0.3 983,583 - +2.7 983,595 - +0.2 983,646 - MMP_RS05165 0.17 +0.6 983,646 - MMP_RS05165 0.17 -1.0 983,646 - MMP_RS05165 0.17 +0.5 983,646 - MMP_RS05165 0.17 +0.4 983,647 + MMP_RS05165 0.17 -0.7
Or see this region's nucleotide sequence