Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05140

Experiment: McCas_H2_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05130 and MMP_RS09015 are separated by 57 nucleotidesMMP_RS09015 and MMP_RS05135 are separated by 28 nucleotidesMMP_RS05135 and MMP_RS05140 are separated by 118 nucleotidesMMP_RS05140 and MMP_RS05145 overlap by 4 nucleotidesMMP_RS05145 and MMP_RS05150 are separated by 9 nucleotidesMMP_RS05150 and MMP_RS05155 are separated by 157 nucleotides MMP_RS05130: MMP_RS05130 - DUF2226 domain-containing protein, at 978,735 to 980,321 _RS05130 MMP_RS09015: MMP_RS09015 - hypothetical protein, at 980,379 to 980,537 _RS09015 MMP_RS05135: MMP_RS05135 - hypothetical protein, at 980,566 to 981,087 _RS05135 MMP_RS05140: MMP_RS05140 - helix-turn-helix transcriptional regulator, at 981,206 to 981,406 _RS05140 MMP_RS05145: MMP_RS05145 - hypothetical protein, at 981,403 to 981,789 _RS05145 MMP_RS05150: MMP_RS05150 - hypothetical protein, at 981,799 to 982,230 _RS05150 MMP_RS05155: MMP_RS05155 - hypothetical protein, at 982,388 to 982,651 _RS05155 Position (kb) 981 982Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 980.242 kb on - strandat 980.242 kb on - strandat 980.243 kb on + strandat 980.246 kb on - strandat 980.277 kb on + strandat 980.313 kb on - strandat 980.314 kb on + strandat 980.315 kb on - strandat 980.315 kb on - strandat 980.316 kb on + strandat 980.316 kb on + strandat 980.316 kb on + strandat 980.316 kb on + strandat 980.316 kb on + strandat 980.347 kb on - strandat 980.348 kb on + strandat 980.378 kb on - strandat 980.385 kb on + strandat 980.392 kb on + strandat 980.621 kb on + strand, within MMP_RS05135at 980.630 kb on - strand, within MMP_RS05135at 980.660 kb on - strand, within MMP_RS05135at 980.696 kb on - strand, within MMP_RS05135at 980.697 kb on + strand, within MMP_RS05135at 980.805 kb on - strand, within MMP_RS05135at 980.805 kb on - strand, within MMP_RS05135at 980.805 kb on - strand, within MMP_RS05135at 980.879 kb on + strand, within MMP_RS05135at 980.879 kb on + strand, within MMP_RS05135at 980.936 kb on - strand, within MMP_RS05135at 980.953 kb on - strand, within MMP_RS05135at 980.954 kb on + strand, within MMP_RS05135at 980.957 kb on - strand, within MMP_RS05135at 980.957 kb on - strand, within MMP_RS05135at 980.957 kb on - strand, within MMP_RS05135at 980.957 kb on - strand, within MMP_RS05135at 980.957 kb on - strand, within MMP_RS05135at 980.957 kb on - strand, within MMP_RS05135at 980.957 kb on - strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.962 kb on + strand, within MMP_RS05135at 980.962 kb on + strand, within MMP_RS05135at 980.962 kb on + strand, within MMP_RS05135at 980.962 kb on + strand, within MMP_RS05135at 980.962 kb on + strand, within MMP_RS05135at 980.962 kb on + strand, within MMP_RS05135at 980.962 kb on + strand, within MMP_RS05135at 980.962 kb on + strand, within MMP_RS05135at 980.963 kb on - strand, within MMP_RS05135at 980.964 kb on + strand, within MMP_RS05135at 980.996 kb on + strand, within MMP_RS05135at 980.998 kb on + strand, within MMP_RS05135at 981.230 kb on - strand, within MMP_RS05140at 981.239 kb on - strand, within MMP_RS05140at 981.392 kb on - strandat 981.442 kb on - strand, within MMP_RS05145at 981.499 kb on - strand, within MMP_RS05145at 981.513 kb on - strand, within MMP_RS05145at 981.513 kb on - strand, within MMP_RS05145at 981.569 kb on - strand, within MMP_RS05145at 981.582 kb on - strand, within MMP_RS05145at 981.634 kb on - strand, within MMP_RS05145at 981.635 kb on + strand, within MMP_RS05145at 981.635 kb on + strand, within MMP_RS05145at 981.635 kb on + strand, within MMP_RS05145at 981.635 kb on + strand, within MMP_RS05145at 981.652 kb on + strand, within MMP_RS05145at 981.652 kb on + strand, within MMP_RS05145at 981.653 kb on - strand, within MMP_RS05145at 981.653 kb on - strand, within MMP_RS05145at 981.655 kb on - strand, within MMP_RS05145at 981.655 kb on - strand, within MMP_RS05145at 981.655 kb on - strand, within MMP_RS05145at 981.655 kb on - strand, within MMP_RS05145at 981.656 kb on + strand, within MMP_RS05145at 981.656 kb on + strand, within MMP_RS05145at 981.656 kb on + strand, within MMP_RS05145at 981.659 kb on + strand, within MMP_RS05145at 981.679 kb on - strand, within MMP_RS05145at 981.694 kb on - strand, within MMP_RS05145at 981.695 kb on + strand, within MMP_RS05145at 981.719 kb on - strand, within MMP_RS05145at 981.749 kb on + strand, within MMP_RS05145at 981.825 kb on + strandat 981.842 kb on + strandat 981.871 kb on - strand, within MMP_RS05150at 981.871 kb on - strand, within MMP_RS05150at 981.887 kb on - strand, within MMP_RS05150at 981.888 kb on + strand, within MMP_RS05150at 981.924 kb on + strand, within MMP_RS05150at 981.989 kb on + strand, within MMP_RS05150at 981.991 kb on - strand, within MMP_RS05150at 981.991 kb on - strand, within MMP_RS05150at 982.124 kb on - strand, within MMP_RS05150at 982.125 kb on + strand, within MMP_RS05150at 982.316 kb on - strandat 982.360 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM
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980,242 - -1.8
980,242 - -1.6
980,243 + -0.2
980,246 - +0.1
980,277 + +0.3
980,313 - +1.2
980,314 + +2.8
980,315 - -0.4
980,315 - -0.2
980,316 + -1.4
980,316 + -0.6
980,316 + -1.9
980,316 + -1.2
980,316 + +0.3
980,347 - -1.5
980,348 + -0.1
980,378 - +0.4
980,385 + -0.1
980,392 + +0.4
980,621 + MMP_RS05135 0.11 +0.8
980,630 - MMP_RS05135 0.12 -0.1
980,660 - MMP_RS05135 0.18 -0.1
980,696 - MMP_RS05135 0.25 -1.0
980,697 + MMP_RS05135 0.25 +0.1
980,805 - MMP_RS05135 0.46 -1.0
980,805 - MMP_RS05135 0.46 -1.1
980,805 - MMP_RS05135 0.46 -1.3
980,879 + MMP_RS05135 0.60 +0.6
980,879 + MMP_RS05135 0.60 +0.1
980,936 - MMP_RS05135 0.71 +0.2
980,953 - MMP_RS05135 0.74 -0.7
980,954 + MMP_RS05135 0.74 +0.4
980,957 - MMP_RS05135 0.75 +0.3
980,957 - MMP_RS05135 0.75 -0.6
980,957 - MMP_RS05135 0.75 +0.2
980,957 - MMP_RS05135 0.75 -0.2
980,957 - MMP_RS05135 0.75 -1.9
980,957 - MMP_RS05135 0.75 +0.2
980,957 - MMP_RS05135 0.75 -0.7
980,958 + MMP_RS05135 0.75 +0.8
980,958 + MMP_RS05135 0.75 -0.2
980,958 + MMP_RS05135 0.75 +0.4
980,958 + MMP_RS05135 0.75 -0.2
980,958 + MMP_RS05135 0.75 +1.4
980,958 + MMP_RS05135 0.75 -1.0
980,958 + MMP_RS05135 0.75 +0.3
980,958 + MMP_RS05135 0.75 +1.9
980,958 + MMP_RS05135 0.75 +0.9
980,958 + MMP_RS05135 0.75 +0.4
980,958 + MMP_RS05135 0.75 -2.0
980,958 + MMP_RS05135 0.75 -0.5
980,958 + MMP_RS05135 0.75 -1.7
980,958 + MMP_RS05135 0.75 +0.9
980,959 - MMP_RS05135 0.75 +1.5
980,959 - MMP_RS05135 0.75 +0.7
980,959 - MMP_RS05135 0.75 -1.8
980,959 - MMP_RS05135 0.75 +1.0
980,959 - MMP_RS05135 0.75 +1.5
980,959 - MMP_RS05135 0.75 +0.8
980,959 - MMP_RS05135 0.75 -0.6
980,959 - MMP_RS05135 0.75 -1.4
980,959 - MMP_RS05135 0.75 +0.3
980,959 - MMP_RS05135 0.75 -0.5
980,960 + MMP_RS05135 0.75 -0.8
980,960 + MMP_RS05135 0.75 -0.5
980,960 + MMP_RS05135 0.75 -0.6
980,960 + MMP_RS05135 0.75 +0.0
980,960 + MMP_RS05135 0.75 -1.5
980,960 + MMP_RS05135 0.75 +0.5
980,960 + MMP_RS05135 0.75 -1.8
980,960 + MMP_RS05135 0.75 +0.3
980,960 + MMP_RS05135 0.75 -0.6
980,960 + MMP_RS05135 0.75 +1.8
980,960 + MMP_RS05135 0.75 +1.2
980,960 + MMP_RS05135 0.75 -0.3
980,960 + MMP_RS05135 0.75 -0.8
980,960 + MMP_RS05135 0.75 +0.2
980,960 + MMP_RS05135 0.75 -0.8
980,960 + MMP_RS05135 0.75 +0.2
980,960 + MMP_RS05135 0.75 +0.1
980,960 + MMP_RS05135 0.75 -0.8
980,961 - MMP_RS05135 0.76 -0.1
980,961 - MMP_RS05135 0.76 -0.6
980,961 - MMP_RS05135 0.76 -1.5
980,961 - MMP_RS05135 0.76 +0.2
980,961 - MMP_RS05135 0.76 +0.8
980,961 - MMP_RS05135 0.76 +0.3
980,961 - MMP_RS05135 0.76 -0.0
980,961 - MMP_RS05135 0.76 -0.0
980,961 - MMP_RS05135 0.76 +0.6
980,961 - MMP_RS05135 0.76 -0.2
980,962 + MMP_RS05135 0.76 -0.8
980,962 + MMP_RS05135 0.76 +0.2
980,962 + MMP_RS05135 0.76 +0.1
980,962 + MMP_RS05135 0.76 +0.2
980,962 + MMP_RS05135 0.76 +0.1
980,962 + MMP_RS05135 0.76 -0.6
980,962 + MMP_RS05135 0.76 +0.8
980,962 + MMP_RS05135 0.76 -0.4
980,963 - MMP_RS05135 0.76 +2.7
980,964 + MMP_RS05135 0.76 +0.5
980,996 + MMP_RS05135 0.82 +1.5
980,998 + MMP_RS05135 0.83 +0.3
981,230 - MMP_RS05140 0.12 +1.2
981,239 - MMP_RS05140 0.16 +1.9
981,392 - -1.3
981,442 - MMP_RS05145 0.10 +0.3
981,499 - MMP_RS05145 0.25 +0.9
981,513 - MMP_RS05145 0.28 +1.9
981,513 - MMP_RS05145 0.28 -0.4
981,569 - MMP_RS05145 0.43 -0.8
981,582 - MMP_RS05145 0.46 -0.3
981,634 - MMP_RS05145 0.60 -1.5
981,635 + MMP_RS05145 0.60 -0.6
981,635 + MMP_RS05145 0.60 +2.1
981,635 + MMP_RS05145 0.60 +0.1
981,635 + MMP_RS05145 0.60 +2.3
981,652 + MMP_RS05145 0.64 -1.3
981,652 + MMP_RS05145 0.64 +2.3
981,653 - MMP_RS05145 0.65 -0.4
981,653 - MMP_RS05145 0.65 +0.5
981,655 - MMP_RS05145 0.65 -1.2
981,655 - MMP_RS05145 0.65 -0.4
981,655 - MMP_RS05145 0.65 -1.2
981,655 - MMP_RS05145 0.65 +0.6
981,656 + MMP_RS05145 0.65 -0.2
981,656 + MMP_RS05145 0.65 -0.9
981,656 + MMP_RS05145 0.65 -0.4
981,659 + MMP_RS05145 0.66 +0.4
981,679 - MMP_RS05145 0.71 -0.4
981,694 - MMP_RS05145 0.75 +0.6
981,695 + MMP_RS05145 0.75 +0.6
981,719 - MMP_RS05145 0.82 -0.6
981,749 + MMP_RS05145 0.89 +4.5
981,825 + -0.2
981,842 + -1.4
981,871 - MMP_RS05150 0.17 +1.0
981,871 - MMP_RS05150 0.17 -0.3
981,887 - MMP_RS05150 0.20 -0.3
981,888 + MMP_RS05150 0.21 -0.1
981,924 + MMP_RS05150 0.29 -0.6
981,989 + MMP_RS05150 0.44 -0.2
981,991 - MMP_RS05150 0.44 +1.2
981,991 - MMP_RS05150 0.44 +2.3
982,124 - MMP_RS05150 0.75 -0.1
982,125 + MMP_RS05150 0.75 +0.9
982,316 - +1.1
982,360 - -0.2

Or see this region's nucleotide sequence